{ "type": "genome", "identifier": "GCF_004761875.1", "organism": "Roseovarius aestuariivivens", "title": "Roseovarius aestuariivivens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004761875.1", "bioproject": "PRJNA224116", "biosample": "SAMN11026382", "wgs_master": "SJEY00000000.1", "refseq_category": "reference genome", "taxid": "1888910", "species_taxid": "1888910", "organism_name": "Roseovarius aestuariivivens", "infraspecific_name": "strain=GHTF-24", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/09", "asm_name": "ASM476187v1", "asm_submitter": "Third Institute of Oceanography", "gbrs_paired_asm": "GCA_004761875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/761/875/GCF_004761875.1_ASM476187v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3941562", "genome_size_ungapped": "3941562", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004761875.1-RS_2024_04_30", "annotation_date": "2024-04-30", "total_gene_count": "3842", "protein_coding_gene_count": "3766", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-09", "dateModified": "2019-04-09", "datePublished": "2019-04-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseovarius aestuariivivens" ], "sample_taxid": [ "1888910" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"total_fragments": 1293, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseovarius atlanticus", "strain": "strain=R12B", "accession": "GCA_001441615.1", "taxid": 1641875, "species_taxid": 1641875, "relation_to_type": "type", "validated": true, "ani": 80.0816, "matched_fragments": 646, "total_fragments": 1293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius confluentis", "strain": "strain=SAG6", "accession": "GCA_002917925.1", "taxid": 1852027, "species_taxid": 1852027, "relation_to_type": "type", "validated": true, "ani": 80.0134, "matched_fragments": 610, "total_fragments": 1293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_008728195.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 79.1903, "matched_fragments": 568, "total_fragments": 1293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius litoreus", "strain": "strain=DSM 28249", "accession": "GCA_900142765.1", "taxid": 1155722, "species_taxid": 1155722, "relation_to_type": "type", "validated": true, "ani": 79.113, "matched_fragments": 532, "total_fragments": 1293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=B108", "accession": "GCA_001441635.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 79.112, "matched_fragments": 572, "total_fragments": 1293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius halotolerans", "strain": "strain=CECT 8110", "accession": "GCA_900172255.1", "taxid": 505353, "species_taxid": 505353, "relation_to_type": "type", "validated": true, "ani": 79.0963, "matched_fragments": 483, "total_fragments": 1293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius 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"accession": "GCA_014640375.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 78.7187, "matched_fragments": 427, "total_fragments": 1293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius faecimaris", "strain": "strain=MME-070", "accession": "GCA_009762325.1", "taxid": 2494550, "species_taxid": 2494550, "relation_to_type": "type", "validated": true, "ani": 78.5948, "matched_fragments": 491, "total_fragments": 1293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius azorensis", "strain": "strain=DSM 100674", "accession": "GCA_900109455.1", "taxid": 1287727, "species_taxid": 1287727, "relation_to_type": "type", "validated": true, "ani": 78.4811, "matched_fragments": 460, "total_fragments": 1293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius gahaiensis", "strain": "strain=GH877", "accession": "GCA_011601345.1", "taxid": 2716691, 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"validated": true, "ani": 77.8654, "matched_fragments": 328, "total_fragments": 1293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleronia sediminis", "strain": "strain=SS33", "accession": "GCA_004358695.1", "taxid": 2547833, "species_taxid": 2547833, "relation_to_type": "type", "validated": true, "ani": 77.8013, "matched_fragments": 284, "total_fragments": 1293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 77.7234, "matched_fragments": 309, "total_fragments": 1293, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum strictum", "strain": "strain=DSM 11289", "accession": "GCA_009649175.1", "taxid": 58314, "species_taxid": 58314, "relation_to_type": "type", "validated": true, "ani": 77.6672, "matched_fragments": 341, 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