{ "type": "genome", "identifier": "GCF_004761885.1", "organism": "Planococcus citreus", "title": "Planococcus citreus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "institute of microbial technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004761885.1", "bioproject": "PRJNA224116", "biosample": "SAMN08903382", "wgs_master": "QBEW00000000.1", "refseq_category": "na", "taxid": "1373", "species_taxid": "1373", "organism_name": "Planococcus citreus", "infraspecific_name": "strain=DSM 20549", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/09", "asm_name": "ASM476188v1", "asm_submitter": "institute of microbial technology", "gbrs_paired_asm": "GCA_004761885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/761/885/GCF_004761885.1_ASM476188v1", "excluded_from_refseq": "na", 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"sample_host_location_id": [], "data_size": "0.974 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3403457", "Number of Sequences": "115", "Longest Sequences (bp)": "116553", "N50 (bp)": "42904", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.6", "Number of CDSs": "3418", "Average Protein Length": "284.6", "Coding Ratio (%)": "85.8", "Number of rRNAs": "3", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Planococcus citreus", "strain": "strain=DSM 20549", "accession": "GCA_004761885.1", "taxid": 1373, "species_taxid": 1373, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1075, "total_fragments": 1079, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Planococcus citreus", "strain": "strain=DSM 20549", "accession": "GCA_003664125.1", "taxid": 1373, "species_taxid": 1373, "relation_to_type": "type", "validated": true, "ani": 99.9838, "matched_fragments": 1076, "total_fragments": 1079, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Planococcus rifietoensis", "strain": "strain=M8", "accession": "GCA_001465795.2", "taxid": 200991, "species_taxid": 200991, "relation_to_type": "type", "validated": true, "ani": 92.9906, "matched_fragments": 963, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus maitriensis", "strain": "strain=S1", "accession": "GCA_003289925.1", "taxid": 221799, "species_taxid": 221799, "relation_to_type": "type", "validated": true, "ani": 90.1055, "matched_fragments": 894, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus plakortidis", "strain": 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"GCF_019042655.1", "gtdb_species": "s__Planococcus sp019042655", "ani": 89.531, "matched_fragments": 906, "total_fragments": 1079, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001592825.1", "gtdb_species": "s__Planococcus maritimus_C", "ani": 85.7144, "matched_fragments": 852, "total_fragments": 1079, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.02", "min_intra_species_ani": "95.52", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.133, 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