{ "type": "genome", "identifier": "GCF_004764705.1", "organism": "Paenibacillus cymbidii", "title": "Paenibacillus cymbidii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hebei University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004764705.1", "bioproject": "PRJNA224116", "biosample": "SAMN10941523", "wgs_master": "SHLX00000000.1", "refseq_category": "reference genome", "taxid": "1639034", "species_taxid": "1639034", "organism_name": "Paenibacillus cymbidii", "infraspecific_name": "strain=R196", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/09", "asm_name": "ASM476470v1", "asm_submitter": "Hebei University", "gbrs_paired_asm": "GCA_004764705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/764/705/GCF_004764705.1_ASM476470v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9454109", "genome_size_ungapped": "9454109", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "81", "contig_count": "81", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004764705.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "7847", "protein_coding_gene_count": "7702", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-09", "dateModified": "2019-04-09", "datePublished": "2019-04-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus cymbidii" ], "sample_taxid": [ "1639034" ], "sample_host_organism": [ "Cymbidium goeringii" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Beijing" ], "sample_host_location_id": [], "data_size": "2.645 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9454109", "Number of Sequences": "81", "Longest Sequences (bp)": "792868", "N50 (bp)": "251828", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.7", "Number of CDSs": "7841", "Average Protein Length": "352.7", "Coding Ratio (%)": "87.7", "Number of rRNAs": "2", "Number of tRNAs": "68", "Number of CRISPRs": "8" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus cymbidii", "strain": "strain=R196", "accession": "GCA_004764705.1", "taxid": 1639034, "species_taxid": 1639034, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3105, "total_fragments": 3108, 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