{ "type": "genome", "identifier": "GCF_004765605.1", "organism": "Hymenobacter aquaticus", "title": "Hymenobacter aquaticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004765605.1", "bioproject": "PRJNA224116", "biosample": "SAMN11321686", "wgs_master": "SRLC00000000.1", "refseq_category": "reference genome", "taxid": "1867101", "species_taxid": "1867101", "organism_name": "Hymenobacter aquaticus", "infraspecific_name": "strain=JCM 31653", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/08", "asm_name": "ASM476560v1", "asm_submitter": "Guangdong Institute of Microbiology", "gbrs_paired_asm": "GCA_004765605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/765/605/GCF_004765605.1_ASM476560v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5511749", "genome_size_ungapped": "5511749", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004765605.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4561", "protein_coding_gene_count": "4502", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-08", "dateModified": "2019-04-08", "datePublished": "2019-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter aquaticus" ], "sample_taxid": [ "1867101" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: the Han River" ], "sample_host_location_id": [], "data_size": "1.527 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5511749", "Number of Sequences": "5", "Longest Sequences (bp)": "3144400", "N50 (bp)": "3144400", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.2", "Number of CDSs": "4534", "Average Protein Length": "351.3", "Coding Ratio (%)": "86.7", "Number of rRNAs": "2", "Number of tRNAs": "47", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter aquaticus", "strain": "strain=JCM 31653", "accession": "GCA_004765605.1", "taxid": 1867101, "species_taxid": 1867101, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1836, "total_fragments": 1836, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Hymenobacter chitinivorans", "strain": "strain=DSM 11115", "accession": "GCA_002797555.1", "taxid": 89969, "species_taxid": 89969, "relation_to_type": "type", "validated": true, "ani": 87.1661, "matched_fragments": 1405, "total_fragments": 1836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallicola", "strain": "strain=9PBR-1", "accession": "GCA_004745645.1", "taxid": 2563114, "species_taxid": 2563114, "relation_to_type": "type", "validated": true, "ani": 85.6161, "matched_fragments": 1335, "total_fragments": 1836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter persicinus", "strain": "strain=1-3-3-3", "accession": "GCA_004167665.1", "taxid": 2025506, "species_taxid": 2025506, "relation_to_type": "type", "validated": true, "ani": 83.6761, "matched_fragments": 1139, "total_fragments": 1836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter elongatus", "strain": "strain=JCM 17223", "accession": "GCA_004745955.1", "taxid": 877208, "species_taxid": 877208, "relation_to_type": "type", "validated": true, "ani": 83.4444, "matched_fragments": 1166, "total_fragments": 1836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter daecheongensis", "strain": "strain=DSM 21074", "accession": "GCA_900141805.1", "taxid": 496053, "species_taxid": 496053, "relation_to_type": "type", "validated": true, "ani": 82.9679, "matched_fragments": 1051, "total_fragments": 1836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter piscis", "strain": "strain=NST-14", "accession": "GCA_018760735.1", "taxid": 2839984, "species_taxid": 2839984, "relation_to_type": "type", "validated": true, "ani": 81.7978, "matched_fragments": 978, "total_fragments": 1836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter psychrotolerans", "strain": "strain=DSM 18569", "accession": "GCA_900142395.1", "taxid": 344998, "species_taxid": 344998, "relation_to_type": "type", "validated": true, "ani": 81.4908, "matched_fragments": 967, "total_fragments": 1836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter perfusus", "strain": "strain=LMG 26000", "accession": "GCA_003944765.1", "taxid": 1236770, "species_taxid": 1236770, "relation_to_type": "type", "validated": true, "ani": 81.118, "matched_fragments": 987, "total_fragments": 1836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter guriensis", "strain": "strain=BT594", "accession": "GCA_015773195.1", "taxid": 2793065, "species_taxid": 2793065, "relation_to_type": "type", "validated": true, "ani": 81.0598, "matched_fragments": 974, "total_fragments": 1836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallilatus", "strain": "strain=9PBR-2", "accession": "GCA_003944705.1", "taxid": 2493666, "species_taxid": 2493666, "relation_to_type": "type", "validated": true, "ani": 80.5003, "matched_fragments": 953, "total_fragments": 1836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", "validated": true, "ani": 80.0906, "matched_fragments": 974, "total_fragments": 1836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter jejuensis", "strain": "strain=17J68-5", "accession": "GCA_006337165.1", "taxid": 2502781, "species_taxid": 2502781, "relation_to_type": "type", "validated": true, "ani": 78.7633, "matched_fragments": 751, "total_fragments": 1836, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter montanus", "strain": "strain=BT664", "accession": "GCA_014699115.1", "taxid": 2771359, "species_taxid": 2771359, "relation_to_type": "type", "validated": true, "ani": 78.7052, "matched_fragments": 664, "total_fragments": 1836, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004765605.1", "gtdb_species": "s__Hymenobacter aquaticus", "ani": 100.0, "matched_fragments": 1836, "total_fragments": 1836, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002797555.1", "gtdb_species": "s__Hymenobacter chitinivorans", "ani": 87.1494, "matched_fragments": 1407, "total_fragments": 1836, "gtdb_taxonomy": 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