{
    "type": "genome",
    "identifier": "GCF_004766045.1",
    "organism": "Desulfosporosinus fructosivorans",
    "title": "Desulfosporosinus fructosivorans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Joint Microbiome Facility",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004766045.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11254866",
        "wgs_master": "SPQQ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2018669",
        "species_taxid": "2018669",
        "organism_name": "Desulfosporosinus fructosivorans",
        "infraspecific_name": "strain=63.6F",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/09",
        "asm_name": "ASM476604v1",
        "asm_submitter": "Joint Microbiome Facility",
        "gbrs_paired_asm": "GCA_004766045.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/766/045/GCF_004766045.1_ASM476604v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6122266",
        "genome_size_ungapped": "6122256",
        "gc_percent": "42.500000",
        "replicon_count": "0",
        "scaffold_count": "38",
        "contig_count": "38",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004766045.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "5898",
        "protein_coding_gene_count": "5681",
        "non_coding_gene_count": "70",
        "pubmed_id": "31371535"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-09",
    "dateModified": "2019-04-09",
    "datePublished": "2019-04-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Desulfosporosinus fructosivorans"
        ],
        "sample_taxid": [
            "2018669"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Baltic Sea: Landsort Deep, Station M0063"
        ],
        "sample_host_location_id": [],
        "data_size": "1.752 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 6.25,
        "strain_heterogeneity": 33.33,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6122266",
        "Number of Sequences": "38",
        "Longest Sequences (bp)": "861625",
        "N50 (bp)": "405172",
        "Gap Ratio (%)": "0.000163",
        "GCcontent (%)": "42.3",
        "Number of CDSs": "5864",
        "Average Protein Length": "289.0",
        "Coding Ratio (%)": "83.0",
        "Number of rRNAs": "2",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Desulfosporosinus fructosivorans",
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                "accession": "GCA_004766045.1",
                "taxid": 2018669,
                "species_taxid": 2018669,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 2015,
                "total_fragments": 2019,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Desulfosporosinus lacus",
                "strain": "strain=DSM 15449",
                "accession": "GCA_900129935.1",
                "taxid": 329936,
                "species_taxid": 329936,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5618,
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                "total_fragments": 2019,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfosporosinus metallidurans",
                "strain": "strain=OL",
                "accession": "GCA_001936615.1",
                "taxid": 1888891,
                "species_taxid": 1888891,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6908,
                "matched_fragments": 602,
                "total_fragments": 2019,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfosporosinus hippei",
                "strain": "strain=DSM 8344",
                "accession": "GCA_900100785.1",
                "taxid": 569859,
                "species_taxid": 569859,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7232,
                "matched_fragments": 405,
                "total_fragments": 2019,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfosporosinus meridiei",
                "strain": "strain=DSM 13257",
                "accession": "GCA_000231385.3",
                "taxid": 79209,
                "species_taxid": 79209,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6698,
                "matched_fragments": 398,
                "total_fragments": 2019,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfosporosinus youngiae",
                "strain": "strain=DSM 17734",
                "accession": "GCA_000244895.1",
                "taxid": 339862,
                "species_taxid": 339862,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3601,
                "matched_fragments": 459,
                "total_fragments": 2019,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 6.25,
            "strain_heterogeneity": 33.33
        },
        "gtdb_result": [
            {
                "accession": "GCF_004766045.1",
                "gtdb_species": "s__Desulfosporosinus fructosivorans",
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                "matched_fragments": 2015,
                "total_fragments": 2019,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfitobacteriia;o__Desulfitobacteriales;f__Desulfitobacteriaceae;g__Desulfosporosinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003132105.1",
                "gtdb_species": "s__Desulfosporosinus sp003132105",
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                "matched_fragments": 440,
                "total_fragments": 2019,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfitobacteriia;o__Desulfitobacteriales;f__Desulfitobacteriaceae;g__Desulfosporosinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001516045.1",
                "gtdb_species": "s__Desulfosporosinus sp001516045",
                "ani": 81.725,
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                "total_fragments": 2019,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfitobacteriia;o__Desulfitobacteriales;f__Desulfitobacteriaceae;g__Desulfosporosinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000770645.1",
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                "total_fragments": 2019,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfitobacteriia;o__Desulfitobacteriales;f__Desulfitobacteriaceae;g__Desulfosporosinus",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
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                "matched_fragments": 546,
                "total_fragments": 2019,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfitobacteriia;o__Desulfitobacteriales;f__Desulfitobacteriaceae;g__Desulfosporosinus",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "matched_fragments": 633,
                "total_fragments": 2019,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfitobacteriia;o__Desulfitobacteriales;f__Desulfitobacteriaceae;g__Desulfosporosinus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.103,
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        "doubling_h": null,
        "growth_tmp": 28.142,
        "optimum_tmp": 28.25,
        "optimum_ph": 7.083,
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        "coding_genes": 4782.833,
        "rRNA16S_genes": 9.5,
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        "gram_stain": 0.4,
        "sporulation": 1.0,
        "motility": 0.5,
        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Desulfosporosinus",
        "fructosivorans"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}