{
    "type": "genome",
    "identifier": "GCF_004766125.1",
    "organism": "Duncaniella freteri",
    "title": "Duncaniella freteri",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Temasek Life Sciences Laboratory Limited",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004766125.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11032485",
        "wgs_master": "SJSA00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2530391",
        "species_taxid": "2530391",
        "organism_name": "Duncaniella freteri",
        "infraspecific_name": "strain=TLL-A3",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/09",
        "asm_name": "ASM476612v1",
        "asm_submitter": "Temasek Life Sciences Laboratory Limited",
        "gbrs_paired_asm": "GCA_004766125.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/766/125/GCF_004766125.1_ASM476612v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3551896",
        "genome_size_ungapped": "3551896",
        "gc_percent": "48.500000",
        "replicon_count": "3",
        "scaffold_count": "5",
        "contig_count": "5",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004766125.1-RS_2025_01_08",
        "annotation_date": "2025-01-08",
        "total_gene_count": "3288",
        "protein_coding_gene_count": "3127",
        "non_coding_gene_count": "74",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-09",
    "dateModified": "2019-04-09",
    "datePublished": "2019-04-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Duncaniella freteri"
        ],
        "sample_taxid": [
            "2530391"
        ],
        "sample_host_organism": [
            "Mus musculus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Singapore"
        ],
        "sample_host_location_id": [],
        "data_size": "1.002 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3551896",
        "Number of Sequences": "5",
        "Longest Sequences (bp)": "2271962",
        "N50 (bp)": "2271962",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.5",
        "Number of CDSs": "3204",
        "Average Protein Length": "328.4",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "12",
        "Number of tRNAs": "60",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Duncaniella freteri",
                "strain": "strain=TLL-A3",
                "accession": "GCA_004766125.1",
                "taxid": 2530391,
                "species_taxid": 2530391,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1165,
                "total_fragments": 1182,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Muribaculum gordoncarteri",
                "strain": "strain=TLL-A4",
                "accession": "GCA_004803695.1",
                "taxid": 2530390,
                "species_taxid": 2530390,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.5199,
                "matched_fragments": 170,
                "total_fragments": 1182,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muribaculum intestinale",
                "strain": "strain=YL27",
                "accession": "GCA_001688845.2",
                "taxid": 1796646,
                "species_taxid": 1796646,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.2402,
                "matched_fragments": 138,
                "total_fragments": 1182,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muribaculum intestinale",
                "strain": "strain=YL27",
                "accession": "GCA_016696845.1",
                "taxid": 1796646,
                "species_taxid": 1796646,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1854,
                "matched_fragments": 135,
                "total_fragments": 1182,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muribaculum intestinale",
                "strain": "strain=YL27",
                "accession": "GCA_002201515.1",
                "taxid": 1796646,
                "species_taxid": 1796646,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9523,
                "matched_fragments": 134,
                "total_fragments": 1182,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Duncaniella muris",
                "strain": "strain=DSM 103720",
                "accession": "GCA_003024805.1",
                "taxid": 2094150,
                "species_taxid": 2094150,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3975,
                "matched_fragments": 194,
                "total_fragments": 1182,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Duncaniella dubosii",
                "strain": "strain=H5",
                "accession": "GCA_004803915.1",
                "taxid": 2518971,
                "species_taxid": 2518971,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6785,
                "matched_fragments": 189,
                "total_fragments": 1182,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paramuribaculum intestinale",
                "strain": "strain=DSM 100749",
                "accession": "GCA_003024925.1",
                "taxid": 2094151,
                "species_taxid": 2094151,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.975,
                "matched_fragments": 106,
                "total_fragments": 1182,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004766125.1",
                "gtdb_species": "s__Duncaniella freteri",
                "ani": 100.0,
                "matched_fragments": 1161,
                "total_fragments": 1182,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.17",
                "min_intra_species_ani": "98.83",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCA_910588795.1",
                "gtdb_species": "s__Duncaniella sp910588795",
                "ani": 82.7817,
                "matched_fragments": 576,
                "total_fragments": 1182,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.60",
                "min_intra_species_ani": "96.60",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003762875.1",
                "gtdb_species": "s__Duncaniella sp001689575",
                "ani": 79.8259,
                "matched_fragments": 328,
                "total_fragments": 1182,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.25",
                "min_intra_species_ani": "96.19",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_910584825.1",
                "gtdb_species": "s__Duncaniella sp910584825",
                "ani": 79.2669,
                "matched_fragments": 297,
                "total_fragments": 1182,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910589485.1",
                "gtdb_species": "s__Duncaniella sp910589485",
                "ani": 79.0778,
                "matched_fragments": 357,
                "total_fragments": 1182,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014802015.1",
                "gtdb_species": "s__Duncaniella sp014802015",
                "ani": 78.6414,
                "matched_fragments": 237,
                "total_fragments": 1182,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900762315.1",
                "gtdb_species": "s__Duncaniella sp900762315",
                "ani": 78.1074,
                "matched_fragments": 112,
                "total_fragments": 1182,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001701225.1",
                "gtdb_species": "s__Duncaniella sp001701225",
                "ani": 78.0666,
                "matched_fragments": 130,
                "total_fragments": 1182,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.71",
                "min_intra_species_ani": "98.22",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_910576785.1",
                "gtdb_species": "s__Duncaniella sp910576785",
                "ani": 78.0492,
                "matched_fragments": 202,
                "total_fragments": 1182,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910587165.1",
                "gtdb_species": "s__Duncaniella sp910587165",
                "ani": 77.9086,
                "matched_fragments": 175,
                "total_fragments": 1182,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Duncaniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001689515.1",
                "gtdb_species": "s__Amulumruptor sp001689515",
                "ani": 77.8594,
                "matched_fragments": 99,
                "total_fragments": 1182,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Amulumruptor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.75",
                "min_intra_species_ani": "95.14",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_910586475.1",
                "gtdb_species": "s__Paramuribaculum sp910586475",
                "ani": 76.6453,
                "matched_fragments": 56,
                "total_fragments": 1182,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Paramuribaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Duncaniella",
        "freteri"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}