{ "type": "genome", "identifier": "GCF_004768465.1", "organism": "Natronospirillum operosum", "title": "Natronospirillum operosum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Research Center of Biotechnology RAS", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004768465.1", "bioproject": "PRJNA224116", "biosample": "SAMN11295843", "wgs_master": "SRMF00000000.1", "refseq_category": "reference genome", "taxid": "2759953", "species_taxid": "2759953", "organism_name": "Natronospirillum operosum", "infraspecific_name": "strain=G-116", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/09", "asm_name": "ASM476846v1", "asm_submitter": "Research Center of Biotechnology RAS", "gbrs_paired_asm": "GCA_004768465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/768/465/GCF_004768465.1_ASM476846v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4335798", "genome_size_ungapped": "4334734", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004768465.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4039", "protein_coding_gene_count": "3970", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-09", "dateModified": "2019-04-09", "datePublished": "2019-04-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Natronospirillum operosum" ], "sample_taxid": [ "2759953" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Moscow" ], "sample_host_location_id": [], "data_size": "1.215 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4335798", "Number of Sequences": "32", "Longest Sequences (bp)": "1386867", "N50 (bp)": "498723", "Gap Ratio (%)": "0.024540", "GCcontent (%)": "60.4", "Number of CDSs": "3986", "Average Protein Length": "328.0", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Natronospirillum operosum", "strain": "strain=G-116", "accession": "GCA_004768465.1", "taxid": 2759953, "species_taxid": 2759953, 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1429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter persicus", "strain": "strain=IBRC-M 10445", "accession": "GCA_900114155.1", "taxid": 930118, "species_taxid": 930118, "relation_to_type": "type", "validated": true, "ani": 76.5027, "matched_fragments": 100, "total_fragments": 1429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas shengliensis", "strain": "strain=CGMCC 1.6444", "accession": "GCA_900104135.1", "taxid": 419597, "species_taxid": 419597, "relation_to_type": "type", "validated": true, "ani": 76.4995, "matched_fragments": 144, "total_fragments": 1429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter persicus", "strain": "strain=KCTC 23561", "accession": "GCA_014652295.1", "taxid": 930118, "species_taxid": 930118, "relation_to_type": "type", "validated": true, "ani": 76.4554, "matched_fragments": 107, "total_fragments": 1429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 76.4315, "matched_fragments": 175, "total_fragments": 1429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola endophyticus", "strain": "strain=CPA92", "accession": "GCA_003206575.1", "taxid": 1949083, "species_taxid": 1949083, "relation_to_type": "type", "validated": true, "ani": 76.4035, "matched_fragments": 126, "total_fragments": 1429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas alimentaria", "strain": "strain=DSM 15356", "accession": "GCA_009902005.1", "taxid": 147248, "species_taxid": 147248, "relation_to_type": "type", "validated": true, "ani": 76.3516, "matched_fragments": 125, "total_fragments": 1429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas 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"accession": "GCA_003696315.1", "taxid": 1176259, "species_taxid": 1176259, "relation_to_type": "type", "validated": true, "ani": 76.3113, "matched_fragments": 107, "total_fragments": 1429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 76.2143, "matched_fragments": 79, "total_fragments": 1429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas nitroreducens", "strain": "strain=DSM 14399", "accession": "GCA_012986245.1", "taxid": 46680, "species_taxid": 46680, "relation_to_type": "suspected-type", "validated": true, "ani": 76.1632, "matched_fragments": 158, "total_fragments": 1429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas nitroreducens", "strain": "strain=NBRC 12694", "accession": "GCA_002091755.1", "taxid": 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"total_fragments": 1429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leeia aquatica", "strain": "strain=IMCC25680", "accession": "GCA_012641365.1", "taxid": 2725557, "species_taxid": 2725557, "relation_to_type": "type", "validated": true, "ani": 75.8829, "matched_fragments": 56, "total_fragments": 1429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas kunmingensis", "strain": "strain=DSM 25974", "accession": "GCA_024397575.1", "taxid": 1211807, "species_taxid": 1211807, "relation_to_type": "type", "validated": true, "ani": 75.8366, "matched_fragments": 129, "total_fragments": 1429, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004768465.1", "gtdb_species": "s__Natronospirillum operosum", "ani": 100.0, "matched_fragments": 1429, "total_fragments": 1429, "gtdb_taxonomy": 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