{ "type": "genome", "identifier": "GCF_004771005.1", "organism": "Leptospira ilyithenensis", "title": "Leptospira ilyithenensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INRS-Institut Armand-Frappier", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004771005.1", "bioproject": "PRJNA224116", "biosample": "SAMN10316365", "wgs_master": "RQHV00000000.1", "refseq_category": "reference genome", "taxid": "2484901", "species_taxid": "2484901", "organism_name": "Leptospira ilyithenensis", "infraspecific_name": "strain=201400974", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/10", "asm_name": "ASM477100v1", "asm_submitter": "INRS-Institut Armand-Frappier", "gbrs_paired_asm": "GCA_004771005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/771/005/GCF_004771005.1_ASM477100v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4211893", "genome_size_ungapped": "4211893", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004771005.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3976", "protein_coding_gene_count": "3883", "non_coding_gene_count": "42", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-10", "dateModified": "2019-04-10", "datePublished": "2019-04-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Leptospira ilyithenensis" ], "sample_taxid": [ "2484901" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Algeria" ], "sample_host_location_id": [], "data_size": "1.193 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4211893", "Number of Sequences": "74", "Longest Sequences (bp)": "712074", "N50 (bp)": "266913", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.5", "Number of CDSs": "3862", "Average Protein Length": "328.2", "Coding Ratio (%)": "90.3", "Number of rRNAs": "3", "Number of tRNAs": "35", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leptospira ilyithenensis", "strain": "strain=201400974", "accession": "GCA_004771005.1", "taxid": 2484901, "species_taxid": 2484901, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1369, "total_fragments": 1371, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leptospira kobayashii", "strain": "strain=E30", "accession": "GCA_003114835.3", "taxid": 1917830, "species_taxid": 1917830, "relation_to_type": "type", "validated": true, "ani": 88.0391, "matched_fragments": 1200, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leptospira ognonensis", "strain": "strain=201702476", "accession": "GCA_004770745.1", "taxid": 2484945, "species_taxid": 2484945, "relation_to_type": "type", "validated": true, "ani": 77.3422, "matched_fragments": 193, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leptospira terpstrae", "strain": "strain=LT 11-33", "accession": "GCA_000332495.2", "taxid": 293075, "species_taxid": 293075, "relation_to_type": "type", "validated": true, "ani": 77.2344, "matched_fragments": 246, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leptospira levettii", "strain": "strain=MCA2-B-A1", "accession": "GCA_002812085.1", "taxid": 2023178, "species_taxid": 2023178, "relation_to_type": "type", "validated": true, "ani": 77.2308, "matched_fragments": 209, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leptospira meyeri", "strain": "strain=DSM 21537", "accession": "GCA_004368965.1", "taxid": 29508, "species_taxid": 29508, "relation_to_type": "type", "validated": true, "ani": 77.1136, "matched_fragments": 228, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leptospira chreensis", "strain": "strain=201903075", "accession": "GCA_016919165.1", "taxid": 2810035, "species_taxid": 2810035, "relation_to_type": "type", "validated": true, "ani": 77.0541, "matched_fragments": 240, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leptospira 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"GCA_016918785.1", "taxid": 2810034, "species_taxid": 2810034, "relation_to_type": "type", "validated": true, "ani": 75.948, "matched_fragments": 58, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004771005.1", "gtdb_species": "s__Leptospira_A ilyithenensis", "ani": 100.0, "matched_fragments": 1369, "total_fragments": 1371, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Leptospirae;o__Leptospirales;f__Leptospiraceae;g__Leptospira_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003114835.1", "gtdb_species": "s__Leptospira_A kobayashii", "ani": 88.0421, "matched_fragments": 1200, "total_fragments": 1371, "gtdb_taxonomy": 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