{
    "type": "genome",
    "identifier": "GCF_004784475.1",
    "organism": "Streptomyces bauhiniae",
    "title": "Streptomyces bauhiniae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chulalongkorn University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004784475.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11349270",
        "wgs_master": "SRRT00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2340725",
        "species_taxid": "2340725",
        "organism_name": "Streptomyces bauhiniae",
        "infraspecific_name": "strain=Bv016",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/11",
        "asm_name": "ASM478447v1",
        "asm_submitter": "Chulalongkorn University",
        "gbrs_paired_asm": "GCA_004784475.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/784/475/GCF_004784475.1_ASM478447v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6747476",
        "genome_size_ungapped": "6747476",
        "gc_percent": "71.500000",
        "replicon_count": "0",
        "scaffold_count": "16",
        "contig_count": "16",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004784475.1-RS_2024_04_22",
        "annotation_date": "2024-04-22",
        "total_gene_count": "6208",
        "protein_coding_gene_count": "6048",
        "non_coding_gene_count": "78",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-11",
    "dateModified": "2019-04-11",
    "datePublished": "2019-04-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces bauhiniae"
        ],
        "sample_taxid": [
            "2340725"
        ],
        "sample_host_organism": [
            "Buahinia variegata"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Thailand"
        ],
        "sample_host_location_id": [],
        "data_size": "1.805 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 1.04,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6747476",
        "Number of Sequences": "16",
        "Longest Sequences (bp)": "1129882",
        "N50 (bp)": "696214",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "71.7",
        "Number of CDSs": "6249",
        "Average Protein Length": "323.4",
        "Coding Ratio (%)": "89.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "76",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptomyces bauhiniae",
                "strain": "strain=Bv016",
                "accession": "GCA_004784475.1",
                "taxid": 2340725,
                "species_taxid": 2340725,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2241,
                "total_fragments": 2242,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Streptomyces griseoluteus",
                "strain": "strain=JCM 4765",
                "accession": "GCA_004784465.1",
                "taxid": 29306,
                "species_taxid": 29306,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.3174,
                "matched_fragments": 1853,
                "total_fragments": 2242,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Streptomyces griseoluteus",
                "strain": "strain=JCM 4765",
                "accession": "GCA_014656035.1",
                "taxid": 29306,
                "species_taxid": 29306,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.3162,
                "matched_fragments": 1860,
                "total_fragments": 2242,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Streptomyces recifensis",
                "strain": "strain=NRRL B-3811",
                "accession": "GCA_002154615.1",
                "taxid": 67355,
                "species_taxid": 67355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.0869,
                "matched_fragments": 1374,
                "total_fragments": 2242,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Streptomyces canarius",
                "strain": "strain=JCM 4733",
                "accession": "GCA_014650735.1",
                "taxid": 285453,
                "species_taxid": 285453,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.5435,
                "matched_fragments": 1614,
                "total_fragments": 2242,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces eurythermus",
                "strain": "strain=JCM 4206",
                "accession": "GCA_014649115.1",
                "taxid": 42237,
                "species_taxid": 42237,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4639,
                "matched_fragments": 1540,
                "total_fragments": 2242,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces barringtoniae",
                "strain": "strain=JA03",
                "accession": "GCA_020819595.1",
                "taxid": 2892029,
                "species_taxid": 2892029,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4224,
                "matched_fragments": 1537,
                "total_fragments": 2242,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces durhamensis",
                "strain": "strain=NRRL B-3309",
                "accession": "GCA_000725475.1",
                "taxid": 68194,
                "species_taxid": 68194,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4066,
                "matched_fragments": 1558,
                "total_fragments": 2242,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces sennicomposti",
                "strain": "strain=RCPT1-4",
                "accession": "GCA_019890635.1",
                "taxid": 2873384,
                "species_taxid": 2873384,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.7811,
                "matched_fragments": 1430,
                "total_fragments": 2242,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces parvulus",
                "strain": "strain=JCM 4068",
                "accession": "GCA_014648855.1",
                "taxid": 146923,
                "species_taxid": 146923,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.179,
                "matched_fragments": 1458,
                "total_fragments": 2242,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces harenosi",
                "strain": "strain=PRKS01-65",
                "accession": "GCA_011008945.1",
                "taxid": 2697029,
                "species_taxid": 2697029,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1743,
                "matched_fragments": 1269,
                "total_fragments": 2242,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces adustus",
                "strain": "strain=NBRC 109810",
                "accession": "GCA_009377175.1",
                "taxid": 1609272,
                "species_taxid": 1609272,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.0854,
                "matched_fragments": 1425,
                "total_fragments": 2242,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces indiaensis",
                "strain": "strain=DSM 43803",
                "accession": "GCA_021474405.1",
                "taxid": 284033,
                "species_taxid": 284033,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.9296,
                "matched_fragments": 1375,
                "total_fragments": 2242,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces thermodiastaticus",
                "strain": "strain=DSM 40573",
                "accession": "GCA_021394575.1",
                "taxid": 44061,
                "species_taxid": 44061,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7305,
                "matched_fragments": 1328,
                "total_fragments": 2242,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces roseirectus",
                "strain": "strain=CRXT-G-22",
                "accession": "GCA_014489635.1",
                "taxid": 2768066,
                "species_taxid": 2768066,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9629,
                "matched_fragments": 1396,
                "total_fragments": 2242,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 1.04,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004784475.1",
                "gtdb_species": "s__Streptomyces bauhiniae",
                "ani": 100.0,
                "matched_fragments": 2241,
                "total_fragments": 2242,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.3953,
                "mean_intra_species_ani": "95.70",
                "min_intra_species_ani": "95.47",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004784465.1",
                "gtdb_species": "s__Streptomyces griseoluteus",
                "ani": 95.3051,
                "matched_fragments": 1854,
                "total_fragments": 2242,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.3953,
                "mean_intra_species_ani": "97.39",
                "min_intra_species_ani": "95.67",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_019090105.1",
                "gtdb_species": "s__Streptomyces sp019090105",
                "ani": 92.8879,
                "matched_fragments": 1773,
                "total_fragments": 2242,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000373625.1",
                "gtdb_species": "s__Streptomyces sp000373625",
                "ani": 88.0246,
                "matched_fragments": 1702,
                "total_fragments": 2242,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009863025.1",
                "gtdb_species": "s__Streptomyces sp009863025",
                "ani": 87.8859,
                "matched_fragments": 1426,
                "total_fragments": 2242,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016482685.1",
                "gtdb_species": "s__Streptomyces sp016482685",
                "ani": 87.8756,
                "matched_fragments": 1720,
                "total_fragments": 2242,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002813405.1",
                "gtdb_species": "s__Streptomyces sp002813405",
                "ani": 86.4021,
                "matched_fragments": 1585,
                "total_fragments": 2242,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000444875.1",
                "gtdb_species": "s__Streptomyces collinus_A",
                "ani": 85.937,
                "matched_fragments": 1557,
                "total_fragments": 2242,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.10",
                "min_intra_species_ani": "97.10",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004124325.1",
                "gtdb_species": "s__Streptomyces sp004124325",
                "ani": 85.5252,
                "matched_fragments": 1500,
                "total_fragments": 2242,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001636945.1",
                "gtdb_species": "s__Streptomyces sp001636945",
                "ani": 85.4384,
                "matched_fragments": 1491,
                "total_fragments": 2242,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001905385.1",
                "gtdb_species": "s__Streptomyces sp001905385",
                "ani": 84.1719,
                "matched_fragments": 1438,
                "total_fragments": 2242,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.01",
                "min_intra_species_ani": "96.01",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.201,
        "cell_length": -0.05,
        "doubling_h": 0.103,
        "growth_tmp": 27.757,
        "optimum_tmp": 29.036,
        "optimum_ph": 7.341,
        "genome_size": 8292419.302,
        "gc_content": 71.543,
        "coding_genes": 7141.289,
        "rRNA16S_genes": 6.155,
        "tRNA_genes": 67.804,
        "gram_stain": 0.998,
        "sporulation": 0.958,
        "motility": 0.049,
        "range_salinity": 0.666,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.005,
        "aerobic_respiration": 0.994,
        "mesophilic_range_tmp": 0.98,
        "thermophilic_range_tmp": 0.019,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.208,
        "coccus_cell_shape": 0.032,
        "filament_cell_shape": 0.582,
        "coccobacillus_cell_shape": 0.098,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.076
    },
    "_genome_taxon": [
        "Streptomyces",
        "bauhiniae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}