{ "type": "genome", "identifier": "GCF_004785685.1", "organism": "Marinobacter confluentis", "title": "Marinobacter confluentis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University at Weihai", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004785685.1", "bioproject": "PRJNA224116", "biosample": "SAMN11339518", "wgs_master": "SRPF00000000.1", "refseq_category": "na", "taxid": "1697557", "species_taxid": "1697557", "organism_name": "Marinobacter confluentis", "infraspecific_name": "strain=HJM-18", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/10", "asm_name": "ASM478568v1", "asm_submitter": "Shandong University at Weihai", "gbrs_paired_asm": "GCA_004785685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/785/685/GCF_004785685.1_ASM478568v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3770660", "genome_size_ungapped": "3770565", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "103", "contig_count": "103", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004785685.1-RS_2025_01_02", "annotation_date": "2025-01-02", "total_gene_count": "3558", "protein_coding_gene_count": "3442", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-10", "dateModified": "2019-04-10", "datePublished": "2019-04-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter confluentis" ], "sample_taxid": [ "1697557" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.069 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.15, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3770660", "Number of Sequences": "103", "Longest Sequences (bp)": "1204263", "N50 (bp)": "1072390", "Gap Ratio (%)": "0.002519", "GCcontent (%)": "57.2", "Number of CDSs": "3441", "Average Protein Length": "331.7", "Coding Ratio (%)": "90.8", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter confluentis", "strain": "strain=HJM-18", "accession": "GCA_004785685.1", "taxid": 1697557, "species_taxid": 1697557, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1239, "total_fragments": 1239, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter confluentis", "strain": "strain=KCTC 42705", "accession": "GCA_008795935.1", "taxid": 1697557, "species_taxid": 1697557, "relation_to_type": "type", "validated": true, "ani": 99.9992, "matched_fragments": 1239, "total_fragments": 1239, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter halotolerans", "strain": "strain=NBRC 110910", "accession": "GCA_008795985.1", "taxid": 1569211, "species_taxid": 1569211, "relation_to_type": "type", "validated": true, "ani": 81.3333, "matched_fragments": 782, "total_fragments": 1239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter vulgaris", "strain": "strain=F01", "accession": "GCA_003344045.1", "taxid": 1928331, "species_taxid": 1928331, "relation_to_type": "type", "validated": true, "ani": 79.7685, "matched_fragments": 533, "total_fragments": 1239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter denitrificans", "strain": "strain=JB02H27", "accession": "GCA_008795955.1", "taxid": 2597703, "species_taxid": 2597703, "relation_to_type": "type", "validated": true, "ani": 79.7057, "matched_fragments": 579, "total_fragments": 1239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter orientalis", "strain": "strain=W62", "accession": "GCA_012956055.1", "taxid": 1928859, "species_taxid": 1928859, "relation_to_type": "type", "validated": true, "ani": 79.5589, "matched_fragments": 503, "total_fragments": 1239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter algicola", "strain": "strain=DG893", "accession": "GCA_000170835.1", "taxid": 236100, "species_taxid": 236100, "relation_to_type": "type", "validated": true, "ani": 79.4996, "matched_fragments": 539, "total_fragments": 1239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter orientalis", "strain": "strain=W62", "accession": "GCA_004792665.1", "taxid": 1928859, "species_taxid": 1928859, "relation_to_type": "type", "validated": true, "ani": 79.4727, "matched_fragments": 498, "total_fragments": 1239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 79.2866, "matched_fragments": 495, "total_fragments": 1239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter pelagius", "strain": "strain=CGMCC 1.6775", "accession": "GCA_900114925.1", "taxid": 379482, "species_taxid": 379482, "relation_to_type": "type", "validated": true, "ani": 79.1949, "matched_fragments": 459, "total_fragments": 1239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter gudaonensis", "strain": "strain=CGMCC 1.6294", "accession": "GCA_900115175.1", "taxid": 375760, "species_taxid": 375760, "relation_to_type": "type", "validated": true, "ani": 79.1748, "matched_fragments": 503, "total_fragments": 1239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter flavimaris", "strain": "strain=LMG 23834", "accession": "GCA_002933295.1", "taxid": 262076, "species_taxid": 262076, "relation_to_type": "type", "validated": true, "ani": 79.0501, "matched_fragments": 459, "total_fragments": 1239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 78.7729, "matched_fragments": 464, "total_fragments": 1239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis subsp. alexandrii", "strain": "strain=LZ-6", "accession": "GCA_005871095.1", "taxid": 2570350, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 78.7463, "matched_fragments": 470, "total_fragments": 1239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter bryozoorum", "strain": "strain=DSM 15401", "accession": "GCA_023156245.1", "taxid": 256324, "species_taxid": 256324, "relation_to_type": "type", "validated": true, "ani": 78.504, "matched_fragments": 329, "total_fragments": 1239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter xestospongiae", "strain": "strain=JCM 17469", "accession": "GCA_023156385.1", "taxid": 994319, "species_taxid": 994319, "relation_to_type": "type", "validated": true, "ani": 78.4013, "matched_fragments": 395, "total_fragments": 1239, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 2.15, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_004785685.1", "gtdb_species": "s__Marinobacter confluentis", "ani": 100.0, "matched_fragments": 1239, "total_fragments": 1239, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_008795985.1", "gtdb_species": "s__Marinobacter halotolerans", "ani": 81.3303, "matched_fragments": 780, "total_fragments": 1239, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000686085.1", "gtdb_species": "s__Marinobacter sp000686085", "ani": 79.9306, 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1239, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.84", "min_intra_species_ani": "96.73", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.79", "num_clustered_genomes": 21, "status": "-" }, { "accession": "GCF_000170835.1", "gtdb_species": "s__Marinobacter algicola", "ani": 79.5213, "matched_fragments": 538, "total_fragments": 1239, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004792665.1", "gtdb_species": "s__Marinobacter orientalis", "ani": 79.453, "matched_fragments": 500, "total_fragments": 1239, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Marinobacter", "confluentis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }