{
    "type": "genome",
    "identifier": "GCF_004791675.1",
    "organism": "Geomonas terrae",
    "title": "Geomonas terrae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Tokyo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004791675.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11294237",
        "wgs_master": "SRSC00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2562681",
        "species_taxid": "2562681",
        "organism_name": "Geomonas terrae",
        "infraspecific_name": "strain=Red111",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/13",
        "asm_name": "ASM479167v1",
        "asm_submitter": "The University of Tokyo",
        "gbrs_paired_asm": "GCA_004791675.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/791/675/GCF_004791675.1_ASM479167v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4696900",
        "genome_size_ungapped": "4696890",
        "gc_percent": "61.000000",
        "replicon_count": "0",
        "scaffold_count": "7",
        "contig_count": "7",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004791675.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "4102",
        "protein_coding_gene_count": "4019",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-13",
    "dateModified": "2019-04-13",
    "datePublished": "2019-04-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Geomonas terrae"
        ],
        "sample_taxid": [
            "2562681"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan: Ibaraki"
        ],
        "sample_host_location_id": [],
        "data_size": "1.317 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 79.17,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
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        "Number of Sequences": "7",
        "Longest Sequences (bp)": "1680501",
        "N50 (bp)": "1057769",
        "Gap Ratio (%)": "0.000213",
        "GCcontent (%)": "61.0",
        "Number of CDSs": "4068",
        "Average Protein Length": "341.4",
        "Coding Ratio (%)": "88.7",
        "Number of rRNAs": "4",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Geomonas terrae",
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                "relation_to_type": "type",
                "validated": true,
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                "status": "inconclusive"
            },
            {
                "organism_name": "Geomonas edaphica",
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                "status": "inconclusive"
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            {
                "organism_name": "Geomonas ferrireducens",
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                "status": "below_threshold"
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            {
                "organism_name": "Geomonas oryzae",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Geomonas azotofigens",
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                "species_taxid": 2843196,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Geomonas paludis",
                "strain": "strain=Red736",
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            {
                "organism_name": "Geomonas anaerohicana",
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                "accession": "GCA_016458305.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Geomonas propionica",
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                "accession": "GCA_016458235.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Geomonas agri",
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                "accession": "GCA_020179605.1",
                "taxid": 2873702,
                "species_taxid": 2873702,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3296,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_004917075.1",
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                "mean_intra_species_ani": "96.45",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": null,
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    "_genome_taxon": [
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}