# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_2	LOCUS_00020	sequence1:1705..2754(+)	frameshift		1464,2739,1656,1623	WP_002354747.1	NAD(P)/FAD-dependent oxidoreductase	98.6	53.1	73.5
MGA_3	LOCUS_00030	sequence1:2706..3293(+)	frameshift		2736	WP_002354747.1	NAD(P)/FAD-dependent oxidoreductase	93.3	30.4	64.8
MGA_5	LOCUS_00050	sequence1:3975..4217(+)	frameshift		4273,4203,3990	WP_002372605.1	polyprenyl synthetase family protein	88.8	21.6	57.7
MGA_6	LOCUS_00060	sequence1:4383..4940(+)	frameshift		4272,4202	WP_002372605.1	polyprenyl synthetase family protein	98.9	55.8	61.2
MGA_7	LOCUS_00070	sequence1:5325..5444(+)	frameshift,internal_stop_codon	5636..5638(+)	5187,5419,5166,5680,5587,5620,5111,5596,5693,5278	WP_002288381.1	ATP-binding cassette domain-containing protein	89.7	6.5	77.1
MGA_8	LOCUS_00080	sequence1:6193..6420(+)	frameshift		6434,6438,6231,5976,6141,6399	WP_002288381.1	ATP-binding cassette domain-containing protein	98.7	13.5	71.6
MGA_9	LOCUS_00090	sequence1:7169..7855(-)	frameshift		7060,7222	WP_002359214.1	DegV family protein	95.6	74.7	50.5
MGA_10	LOCUS_00100	sequence1:7876..8253(-)	frameshift		8418,8493,8406	WP_002359213.1	adenylosuccinate synthase	100.0	29.1	91.2
MGA_11	LOCUS_00110	sequence1:8485..8757(-)	frameshift		8416,8404,8773,8491,8956	WP_002359213.1	adenylosuccinate synthase	98.9	20.7	92.1
MGA_12	LOCUS_00120	sequence1:8712..8948(-)	frameshift		8490,8955,9060,8772	WP_002359213.1	adenylosuccinate synthase	74.4	13.5	87.9
MGA_13	LOCUS_00130	sequence1:9001..9162(-)	frameshift		8955,9060,8772	WP_003243325.1	adenylosuccinate synthase	64.2	7.9	100.0
MGA_14	LOCUS_00140	sequence1:9327..9629(-)	frameshift		9703	WP_002288373.1	replicative DNA helicase	100.0	22.4	74.5
MGA_15	LOCUS_00150	sequence1:9653..10687(-)	frameshift		9700	WP_002381331.1	replicative DNA helicase	95.6	72.3	83.9
MGA_46	LOCUS_00460	sequence1:49495..50433(-)	partial			WP_016252543.1	ISL3-like element IS1476 family transposase	99.4	73.1	61.0
MGA_57	LOCUS_00570	sequence1:69394..70095(+)	frameshift		70074	WP_002385989.1	hypothetical protein	94.4	51.4	24.3
MGA_58	LOCUS_00580	sequence1:70088..70717(+)	frameshift		70077	WP_002288852.1	two-component system activity regulator YycH	91.9	43.2	33.2
MGA_126	LOCUS_01260	sequence1:143336..143683(-)	partial			WP_002293992.1	DUF3899 domain-containing protein	72.2	74.8	52.3
MGA_151	LOCUS_01510	sequence1:172633..173448(+)	partial			WP_012027519.1	hypothetical protein	29.2	28.9	43.0
MGA_162	LOCUS_01620	sequence1:181611..181883(+)	partial			WP_010906263.1	hypothetical protein	84.4	62.0	38.7
MGA_169	LOCUS_01690	sequence1:189495..190982(+)	partial			WP_011674015.1	TPM domain-containing protein	53.5	60.0	26.2
MGA_197	LOCUS_01970	sequence1:220863..221999(+)	partial			WP_011475733.1	competence protein CoiA family protein	68.0	82.6	35.0
MGA_243	LOCUS_02420	sequence1:287019..287831(-)	partial			WP_002358647.1	VOC family protein	78.1	74.4	47.4
MGA_253	LOCUS_02520	sequence1:297988..300309(+)	partial			WP_002386956.1	MucBP domain-containing protein	56.1	55.1	23.0
MGA_335	LOCUS_03340	sequence1:387058..388011(-)	frameshift		388037	WP_002288451.1	UDP-glucose--hexose-1-phosphate uridylyltransferase	99.7	64.2	66.9
MGA_336	LOCUS_03350	sequence1:387942..388535(-)	frameshift		388037	WP_002288451.1	UDP-glucose--hexose-1-phosphate uridylyltransferase	84.3	34.0	56.5
MGA_367	LOCUS_03660	sequence1:421712..428026(+)	partial			WP_011837563.1	Cna B-type domain-containing protein	50.4	69.1	37.1
MGA_447	LOCUS_04460	sequence1:513202..513774(+)	partial			WP_010922063.1	hypothetical protein	72.6	65.9	31.9
MGA_459	LOCUS_04580	sequence1:520920..521678(+)	partial			WP_000963206.1	nucleotide-binding protein	37.7	33.4	54.0
MGA_462	LOCUS_04610	sequence1:523620..524381(+)	partial			WP_000227333.1	polymorphic toxin type 50 domain-containing protein	96.0	59.1	48.1
MGA_480	LOCUS_04790	sequence1:534489..535991(+)	partial			WP_011101125.1	phage tail spike protein	81.2	63.9	34.0
MGA_482	LOCUS_04810	sequence1:536767..537270(+)	partial			WP_010966366.1	Ig-like domain-containing protein	71.9	17.6	43.2
MGA_489	LOCUS_04880	sequence1:539362..540414(+)	partial			WP_000405235.1	N-acetylmuramoyl-L-alanine amidase LytA	61.7	68.6	50.9
MGA_512	LOCUS_05110	sequence1:571098..571274(+)	partial			WP_003694124.1	30S ribosomal protein S21	74.1	70.5	97.7
MGA_567	LOCUS_05660	sequence1:616086..616973(-)	partial			WP_012775167.1	cation diffusion facilitator family transporter	99.7	71.4	53.7
MGA_640	LOCUS_06390	sequence1:698382..698945(+)	partial			WP_002386659.1	hypothetical protein	70.1	60.3	29.4
MGA_658	LOCUS_06570	sequence1:720266..721009(+)	partial			WP_001056719.1	MurR/RpiR family transcriptional regulator	82.2	73.4	24.4
MGA_661	LOCUS_06600	sequence1:724019..724651(+)	partial			WP_003245573.1	acyltransferase family protein	99.5	61.2	34.1
MGA_766	LOCUS_07650	sequence1:840494..840910(+)	partial			WP_010905251.1	YcjF family protein	86.2	54.8	44.5
MGA_777	LOCUS_07760	sequence1:851966..852226(-)	partial			WP_002287046.1	ECF transporter S component	83.7	34.3	43.1
MGA_781	LOCUS_07800	sequence1:858230..859102(+)	partial			WP_011027879.1	serine hydrolase	66.6	63.0	32.2
MGA_786	LOCUS_07850	sequence1:862426..862863(+)	partial			WP_000951058.1	winged helix DNA-binding protein	62.8	62.3	30.8
MGA_850	LOCUS_08490	sequence1:932513..932992(+)	partial			WP_010905486.1	hypothetical protein	80.5	43.0	35.2
MGA_879	LOCUS_08780	sequence1:965072..966730(+)	partial			WP_003244566.1	two-component system response regulator YesN	29.0	43.5	39.4
MGA_900	LOCUS_08990	sequence1:989133..989333(-)	frameshift		989413	WP_002288234.1	type 2 isopentenyl-diphosphate Delta-isomerase	95.5	17.8	33.3
MGA_901	LOCUS_09000	sequence1:989378..990193(-)	frameshift		989413	WP_011921871.1	type 2 isopentenyl-diphosphate Delta-isomerase	94.1	70.4	55.6
MGA_905	LOCUS_09040	sequence1:993406..994704(-)	partial			WP_002382276.1	hydroxymethylglutaryl-CoA reductase, degradative	97.9	51.3	50.2
MGA_924	LOCUS_09230	sequence1:1013078..1013344(-)	partial			WP_010963525.1	TetR/AcrR family transcriptional regulator	75.0	34.0	40.9
MGA_938	LOCUS_09370	sequence1:1025518..1026498(-)	frameshift		1026529	WP_002294441.1	D-aspartate ligase	100.0	78.9	58.1
MGA_939	LOCUS_09380	sequence1:1026515..1026757(-)	frameshift		1026535	WP_010906398.1	carboxylate--amine ligase	81.2	15.9	61.5
MGA_972	LOCUS_09710	sequence1:1058057..1058473(-)	partial			WP_197242566.1	MmcQ/YjbR family DNA-binding protein	70.3	82.9	34.7
MGA_981	LOCUS_09790	sequence1:1069744..1071051(-)	partial			WP_011963645.1	hypothetical protein	66.2	73.6	28.4
MGA_982	LOCUS_09800	sequence1:1071048..1072796(-)	partial			WP_014220075.1	AAA family ATPase	43.3	37.8	27.6
MGA_986	LOCUS_09840	sequence1:1074389..1076053(-)	partial			WP_200858944.1	DUF2075 domain-containing protein	77.4	54.3	27.3
MGA_987	LOCUS_09850	sequence1:1076071..1077972(-)	partial			WP_200858944.1	DUF2075 domain-containing protein	93.5	73.4	24.2
MGA_990	LOCUS_09880	sequence1:1080457..1080684(-)	internal_stop_codon	1080709..1080711(-)		WP_188367817.1	recombinase family protein	62.7	22.7	83.0
MGA_991	LOCUS_09890	sequence1:1080709..1080891(-)	internal_stop_codon	1080709..1080711(-)		WP_188367817.1	recombinase family protein	100.0	30.0	85.5
MGA_1044	LOCUS_10420	sequence1:1134421..1134870(-)	partial			WP_002263625.1	DUF948 domain-containing protein	70.5	80.2	45.7
MGA_1097	LOCUS_10950	sequence1:1196723..1197052(-)	partial			WP_011475831.1	IS3 family transposase	100.0	41.1	45.9
MGA_1099	LOCUS_10970	sequence1:1197516..1198010(-)	frameshift		1197341,1197566	WP_100190734.1	IS3 family transposase	90.2	28.0	41.9
MGA_1119	LOCUS_11170	sequence1:1215526..1215744(-)	partial			WP_095443744.1	IS3 family transposase	77.8	14.5	53.6
MGA_1120	LOCUS_11180	sequence1:1216171..1216899(+)	frameshift		1215998,1216887	WP_016252543.1	ISL3-like element IS1476 family transposase	98.3	60.8	55.4
MGA_1121	LOCUS_11190	sequence1:1217239..1217619(-)	partial			WP_109983297.1	IS200/IS605 family transposase	85.7	67.9	84.3
MGA_1122	LOCUS_11200	sequence1:1218001..1220874(-)	partial			WP_001083683.1	AAA family ATPase	42.2	67.1	35.1
MGA_1145	LOCUS_11430	sequence1:1246943..1248637(-)	partial			WP_010922088.1	tape measure protein	63.1	38.5	32.9
MGA_1150	LOCUS_11480	sequence1:1251132..1252061(-)	partial			WP_000224680.1	phage replisome organizer N-terminal domain-containing protein	38.8	50.4	57.0
MGA_1171	LOCUS_11690	sequence1:1267720..1268391(+)	partial			WP_002286764.1	5-bromo-4-chloroindolyl phosphate hydrolysis family protein	73.1	74.1	50.3
MGA_1173	LOCUS_11710	sequence1:1269778..1270476(-)	partial			WP_002667792.1	M23 family metallopeptidase	92.7	72.0	32.8
MGA_1200	LOCUS_11980	sequence1:1304640..1306361(-)	partial			WP_002287350.1	patatin-like phospholipase family protein	70.2	70.3	37.8
MGA_1208	LOCUS_12060	sequence1:1314307..1316763(-)	partial			WP_010989592.1	bacterial Ig-like domain-containing protein	40.2	16.5	28.8
MGA_1209	LOCUS_12070	sequence1:1317079..1319703(-)	partial			WP_010989982.1	lmo2396 family class 1 internalin	33.8	29.9	31.8
MGA_1210	LOCUS_12080	sequence1:1319964..1320797(-)	partial			WP_002365407.1	WxL domain-containing protein	72.2	71.7	41.0
MGA_1221	LOCUS_12190	sequence1:1330980..1331258(-)	partial			WP_002402964.1	signal peptidase I	98.9	38.6	37.5
MGA_1268	LOCUS_12660	sequence1:1379942..1380715(-)	partial			WP_002287156.1	YutD family protein	72.0	80.9	41.1
MGA_1283	LOCUS_12810	sequence1:1394984..1395868(-)	frameshift		1395031	WP_002304547.1	V-type ATPase subunit	93.2	83.5	56.2
MGA_1288	LOCUS_12860	sequence1:1399578..1399964(-)	partial			WP_002290887.1	DUF1292 domain-containing protein	68.0	83.2	65.5
MGA_1322	LOCUS_13200	sequence1:1432731..1433699(-)	partial			WP_012775246.1	CdaR family protein	60.9	84.2	32.3
MGA_1344	LOCUS_13420	sequence1:1459102..1459797(-)	partial			WP_010973119.1	GntR family transcriptional regulator	36.4	30.5	31.0
MGA_1371	LOCUS_13690	sequence1:1481107..1481931(+)	partial			WP_002680450.1	TPM domain-containing protein	50.4	56.4	27.4
MGA_1397	LOCUS_13950	sequence1:1514457..1514864(+)	frameshift		1514852	WP_002286323.1	response regulator transcription factor	90.4	55.0	55.7
MGA_1398	LOCUS_13960	sequence1:1514827..1515132(+)	frameshift		1514837	WP_011948592.1	response regulator transcription factor	98.0	44.4	60.6
MGA_1444	LOCUS_14420	sequence1:1557206..1558123(-)	partial			WP_010714140.1	DNA primase family protein	59.7	22.7	31.7
MGA_1487	LOCUS_14850	sequence1:1592639..1593886(-)	frameshift		1593806	WP_011675048.1	PH domain-containing protein	99.0	81.2	24.9
MGA_1500	LOCUS_14980	sequence1:1609006..1610451(-)	partial			WP_002287473.1	N-acetylglucosamine-specific PTS transporter subunit IIBC	99.4	72.9	66.0
MGA_1513	LOCUS_15110	sequence1:1621316..1622026(-)	partial			WP_000771020.1	type II CAAX endopeptidase family protein	53.8	59.6	32.8
MGA_1518	LOCUS_15160	sequence1:1627040..1627759(-)	partial			WP_012257740.1	SDR family NAD(P)-dependent oxidoreductase	77.4	73.0	26.1
MGA_1530	LOCUS_15280	sequence1:1636468..1637175(+)	partial			WP_037399222.1	lysozyme	54.5	21.5	35.9
MGA_1537	LOCUS_15350	sequence1:1643872..1646109(+)	partial			WP_002287386.1	NlpC/P60 family protein	36.4	51.0	30.8
MGA_1545	LOCUS_15430	sequence1:1657279..1660788(-)	partial			WP_003243463.1	teichoic acid poly(glycerol phosphate) polymerase	51.6	83.0	31.4
MGA_1549	LOCUS_15470	sequence1:1663392..1664525(-)	partial			WP_002485461.1	CDP-glycerol glycerophosphotransferase family protein	97.1	48.1	31.0
MGA_1551	LOCUS_15490	sequence1:1667214..1669790(-)	partial			WP_002383753.1	DUF5776 domain-containing protein	38.6	35.2	37.8
MGA_1552	LOCUS_15500	sequence1:1669958..1670758(-)	frameshift		1670816	WP_003724106.1	glycosyltransferase family 2 protein	93.2	78.7	50.8
MGA_1558	LOCUS_15560	sequence1:1675021..1676175(-)	partial			WP_000430091.1	LCP family protein	73.7	81.4	35.5
MGA_1565	LOCUS_15630	sequence1:1682281..1682772(+)	partial			WP_002347285.1	ISL3-like element ISEfa5 family transposase	95.1	36.0	39.4
MGA_1566	LOCUS_15640	sequence1:1682929..1684767(-)	partial			WP_076642750.1	MucBP domain-containing protein	10.1	5.2	41.9
MGA_1617	LOCUS_16150	sequence1:1736538..1737404(-)	partial			WP_010965896.1	AraC family transcriptional regulator	69.8	70.1	27.1
MGA_1739	LOCUS_17370	sequence1:1870646..1878046(-)	partial			WP_164691239.1	SpaA isopeptide-forming pilin-related protein	58.4	42.3	40.0
MGA_1749	LOCUS_17470	sequence1:1890302..1890799(-)	partial			WP_002402964.1	signal peptidase I	93.9	64.7	38.5
MGA_1761	LOCUS_17590	sequence1:1901585..1902127(-)	partial			WP_010887932.1	DNA helicase RecQ	35.0	7.6	41.3
MGA_1764	LOCUS_17620	sequence1:1903501..1905930(-)	partial			WP_010989478.1	BspA family leucine-rich repeat surface protein	16.3	17.7	29.5
MGA_1767	LOCUS_17650	sequence1:1908429..1909253(+)	frameshift		1909226,1909244,1909247	WP_010706701.1	autolysin	78.1	29.4	55.4
MGA_1768	LOCUS_17660	sequence1:1909207..1909614(+)	frameshift		1909244,1909229	WP_010905256.1	LysM peptidoglycan-binding domain-containing protein	81.5	30.3	38.3
MGA_1773	LOCUS_17710	sequence1:1912035..1912502(+)	partial			WP_012775155.1	DNA repair protein RadC	84.5	58.0	50.0
MGA_1848	LOCUS_18460	sequence1:1972502..1973911(+)	partial			WP_002905175.1	helix-turn-helix domain-containing protein	45.2	43.8	23.5
MGA_1849	LOCUS_18470	sequence1:1973949..1977914(-)	partial			WP_011101409.1	WxL domain-containing protein	15.0	16.7	38.2
MGA_1856	LOCUS_18540	sequence2:77..475(+)	frameshift		26,482,510,407	WP_035454417.1	MobQ family relaxase	72.0	13.8	48.4
MGA_1865	LOCUS_18630	sequence2:3606..4049(+)	frameshift		3601,4028	WP_011222039.1	DUF87 domain-containing protein	93.9	20.5	33.3
MGA_1866	LOCUS_18640	sequence2:4187..5227(+)	frameshift		4028	WP_011222039.1	DUF87 domain-containing protein	93.9	45.5	36.6
MGA_1868	LOCUS_18660	sequence2:6615..7724(+)	partial			WP_011861916.1	bifunctional lysozyme/C40 family peptidase	52.8	58.4	42.9
MGA_1871	LOCUS_18690	sequence2:8717..9436(+)	frameshift		9433	WP_011222033.1	type IV secretory system conjugative DNA transfer family protein	96.7	45.7	45.7
MGA_1872	LOCUS_18700	sequence2:9507..10373(+)	frameshift		9433	WP_011222033.1	type IV secretory system conjugative DNA transfer family protein	83.3	45.1	40.1
MGA_1878	LOCUS_18760	sequence2:14281..14520(+)	partial			WP_002358661.1	LPXTG cell wall anchor domain-containing protein	100.0	72.5	88.6
MGA_1895	LOCUS_18920	sequence3:756..1073(-)	partial			WP_010989481.1	hypothetical protein	96.2	34.8	45.5
MGA_1899	LOCUS_18960	sequence3:2171..2407(+)	frameshift		2272,2520,2648,2347,2396,2557,2620	WP_002287936.1	recombinase family protein	96.2	36.8	55.6
MGA_1902	LOCUS_18990	sequence3:3347..3724(-)	partial			WP_011986320.1	amidase domain-containing protein	57.6	45.8	36.9
MGA_1908	LOCUS_19050	sequence3:6400..6906(+)	frameshift		6819	WP_000969590.1	Y-family DNA polymerase	83.9	32.4	62.2
MGA_1909	LOCUS_19060	sequence3:7016..7723(+)	frameshift		6825	WP_224435027.1	Y-family DNA polymerase	100.0	53.3	60.0
MGA_1919	LOCUS_19160	sequence3:13890..14381(+)	partial			WP_002294320.1	recombinase family protein	77.3	68.9	34.6
MGA_1921	LOCUS_19180	sequence3:15923..20581(+)	partial			WP_141114612.1	SpaA isopeptide-forming pilin-related protein	70.9	30.6	25.5
MGA_1929	LOCUS_19260	sequence3:23714..25201(+)	partial			WP_013390242.1	Ig-like domain-containing protein	27.3	8.0	29.9
MGA_1931	LOCUS_19280	sequence3:25398..27440(+)	partial			WP_047936604.1	ArdC-like ssDNA-binding domain-containing protein	49.0	40.9	40.2
MGA_1936	LOCUS_19330	sequence3:35306..36424(+)	partial			WP_061675971.1	lysozyme family protein	49.5	57.2	44.4
MGA_1942	LOCUS_19390	sequence3:40247..42394(+)	partial			WP_000431475.1	DUF3991 and TOPRIM domain-containing protein	39.2	81.8	35.9
MGA_1945	LOCUS_19420	sequence3:44659..44781(-)	partial			WP_061086363.1	IS6-like element IS1216 family transposase	82.5	16.4	81.1
MGA_1947	LOCUS_19440	sequence3:45285..47483(-)	partial			WP_010989574.1	lmo0801 family class 1 internalin	20.2	24.3	28.7
MGA_1951	LOCUS_19480	sequence3:50631..50780(+)	partial			WP_071879666.1	putative holin-like toxin	67.3	67.3	75.8
MGA_1955	LOCUS_19520	sequence3:52173..53708(-)	partial			WP_011331420.1	DUF4942 domain-containing protein	17.2	18.9	39.1
