{ "type": "genome", "identifier": "GCF_004792695.1", "organism": "Sphingomonas naasensis", "title": "Sphingomonas naasensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Lanzhou university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004792695.1", "bioproject": "PRJNA224116", "biosample": "SAMN11340042", "wgs_master": "SRXU00000000.1", "refseq_category": "reference genome", "taxid": "1344951", "species_taxid": "1344951", "organism_name": "Sphingomonas naasensis", "infraspecific_name": "strain=KIS18-15", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/14", "asm_name": "ASM479269v1", "asm_submitter": "Lanzhou university", "gbrs_paired_asm": "GCA_004792695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/792/695/GCF_004792695.1_ASM479269v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4339567", "genome_size_ungapped": "4339471", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004792695.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4169", "protein_coding_gene_count": "4084", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-14", "dateModified": "2019-04-14", "datePublished": "2019-04-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonas naasensis" ], "sample_taxid": [ "1344951" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Baengnyeong Island" ], "sample_host_location_id": [], "data_size": "1.173 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4339567", "Number of Sequences": "19", "Longest Sequences (bp)": "1120169", "N50 (bp)": "468021", "Gap Ratio (%)": "0.002212", "GCcontent (%)": "67.7", "Number of CDSs": "4121", "Average Protein Length": "320.6", "Coding Ratio (%)": "91.3", "Number of rRNAs": "4", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingomonas naasensis", "strain": "strain=KIS18-15", "accession": "GCA_004792695.1", "taxid": 1344951, "species_taxid": 1344951, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1436, "total_fragments": 1436, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sphingomonas naasensis", "strain": "strain=DSM 100060", "accession": "GCA_011762145.1", "taxid": 1344951, "species_taxid": 1344951, "relation_to_type": "type", "validated": true, "ani": 99.9993, "matched_fragments": 1434, "total_fragments": 1436, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sphingomonas psychrotolerans", "strain": "strain=Cra20", "accession": "GCA_002796605.1", "taxid": 1327635, "species_taxid": 1327635, "relation_to_type": "type", "validated": true, "ani": 85.8077, "matched_fragments": 1051, "total_fragments": 1436, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas gei", "strain": "strain=ZFGT-11", "accession": "GCA_004792685.1", "taxid": 1395960, "species_taxid": 1395960, "relation_to_type": "type", "validated": true, "ani": 85.5314, "matched_fragments": 1021, "total_fragments": 1436, "ani_threshold": 95, "status": "below_threshold" }, { 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