{ "type": "genome", "identifier": "GCF_004793685.1", "organism": "Marinicauda algicola", "title": "Marinicauda algicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004793685.1", "bioproject": "PRJNA224116", "biosample": "SAMN11356310", "wgs_master": "SRXW00000000.1", "refseq_category": "na", "taxid": "2029849", "species_taxid": "2029849", "organism_name": "Marinicauda algicola", "infraspecific_name": "strain=JCM 31718", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/14", "asm_name": "ASM479368v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_004793685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/793/685/GCF_004793685.1_ASM479368v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3426473", "genome_size_ungapped": "3426377", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "127", "contig_count": "127", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004793685.1-RS_2024_04_05", "annotation_date": "2024-04-05", "total_gene_count": "3438", "protein_coding_gene_count": "3347", "non_coding_gene_count": "48", "pubmed_id": "28829022" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-14", "dateModified": "2019-04-14", "datePublished": "2019-04-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinicauda algicola" ], "sample_taxid": [ "2029849" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.930 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3426473", "Number of Sequences": "127", "Longest Sequences (bp)": "1339116", "N50 (bp)": "658970", "Gap Ratio (%)": "0.002802", "GCcontent (%)": "68.2", "Number of CDSs": "3308", "Average Protein Length": "312.6", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinicauda algicola", "strain": "strain=JCM 31718", "accession": "GCA_004793685.1", "taxid": 2029849, "species_taxid": 2029849, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1121, "total_fragments": 1123, "ani_threshold": 95, 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