{
    "type": "genome",
    "identifier": "GCF_004798935.1",
    "organism": "Ningiella ruwaisensis",
    "title": "Ningiella ruwaisensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Oklahoma",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004798935.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10118563",
        "wgs_master": "RAHT00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2364274",
        "species_taxid": "2364274",
        "organism_name": "Ningiella ruwaisensis",
        "infraspecific_name": "strain=B66",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/17",
        "asm_name": "ASM479893v1",
        "asm_submitter": "University of Oklahoma",
        "gbrs_paired_asm": "GCA_004798935.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/798/935/GCF_004798935.1_ASM479893v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4077506",
        "genome_size_ungapped": "4077506",
        "gc_percent": "43.000000",
        "replicon_count": "0",
        "scaffold_count": "29",
        "contig_count": "29",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004798935.1-RS_2024_04_03",
        "annotation_date": "2024-04-03",
        "total_gene_count": "3636",
        "protein_coding_gene_count": "3556",
        "non_coding_gene_count": "60",
        "pubmed_id": "32614761"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-17",
    "dateModified": "2019-04-17",
    "datePublished": "2019-04-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ningiella ruwaisensis"
        ],
        "sample_taxid": [
            "2364274"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Qatar"
        ],
        "sample_host_location_id": [],
        "data_size": "1.163 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4077506",
        "Number of Sequences": "29",
        "Longest Sequences (bp)": "796312",
        "N50 (bp)": "627677",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.2",
        "Number of CDSs": "3563",
        "Average Protein Length": "340.9",
        "Coding Ratio (%)": "89.4",
        "Number of rRNAs": "1",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Ningiella ruwaisensis",
                "strain": "strain=B66",
                "accession": "GCA_004798935.1",
                "taxid": 2364274,
                "species_taxid": 2364274,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1347,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Alteromonas mediterranea",
                "strain": "strain=DE",
                "accession": "GCA_000020585.3",
                "taxid": 314275,
                "species_taxid": 314275,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1413,
                "matched_fragments": 71,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glaciecola nitratireducens",
                "strain": "strain=FR1064",
                "accession": "GCA_000226565.1",
                "taxid": 300231,
                "species_taxid": 300231,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.647,
                "matched_fragments": 83,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alteromonas macleodii",
                "strain": "strain=ATCC 27126",
                "accession": "GCA_000172635.2",
                "taxid": 28108,
                "species_taxid": 28108,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.637,
                "matched_fragments": 70,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glaciecola pallidula",
                "strain": "strain=DSM 14239",
                "accession": "GCA_000428905.1",
                "taxid": 56807,
                "species_taxid": 56807,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6256,
                "matched_fragments": 76,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glaciecola punicea",
                "strain": "strain=ACAM 611",
                "accession": "GCA_000252165.2",
                "taxid": 56804,
                "species_taxid": 56804,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5618,
                "matched_fragments": 61,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alteromonas abrolhosensis",
                "strain": "strain=PEL67E",
                "accession": "GCA_001953635.1",
                "taxid": 1892904,
                "species_taxid": 1892904,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5198,
                "matched_fragments": 77,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glaciecola pallidula",
                "strain": "strain=ACAM 615",
                "accession": "GCA_000315035.1",
                "taxid": 56807,
                "species_taxid": 56807,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5091,
                "matched_fragments": 72,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alteromonas lipotrueae",
                "strain": "strain=MD_652",
                "accession": "GCA_019249215.1",
                "taxid": 2803814,
                "species_taxid": 2803814,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4508,
                "matched_fragments": 71,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alteromonas facilis",
                "strain": "strain=P0213",
                "accession": "GCA_002807665.1",
                "taxid": 2048004,
                "species_taxid": 2048004,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.412,
                "matched_fragments": 75,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraglaciecola marina",
                "strain": "strain=D3211",
                "accession": "GCA_004360155.1",
                "taxid": 2500157,
                "species_taxid": 2500157,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0623,
                "matched_fragments": 51,
                "total_fragments": 1347,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004798935.1",
                "gtdb_species": "s__Glaciecola ruwaisensis",
                "ani": 100.0,
                "matched_fragments": 1347,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Glaciecola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004328665.1",
                "gtdb_species": "s__Pseudoalteromonas sp001974855",
                "ani": 82.2493,
                "matched_fragments": 52,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.16",
                "min_intra_species_ani": "95.35",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_018595715.1",
                "gtdb_species": "s__Glaciecola sp018595715",
                "ani": 78.268,
                "matched_fragments": 184,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Glaciecola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000597705.1",
                "gtdb_species": "s__Alteromonas sp000597705",
                "ani": 78.1757,
                "matched_fragments": 58,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.20",
                "min_intra_species_ani": "99.20",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_015595035.1",
                "gtdb_species": "s__Glaciecola sp015595035",
                "ani": 77.8167,
                "matched_fragments": 77,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Glaciecola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019249245.1",
                "gtdb_species": "s__Alteromonas lipotrueiana",
                "ani": 77.727,
                "matched_fragments": 61,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000226565.1",
                "gtdb_species": "s__Glaciecola nitratireducens",
                "ani": 77.647,
                "matched_fragments": 83,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Glaciecola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003429285.1",
                "gtdb_species": "s__Alteromonas sediminis",
                "ani": 77.6402,
                "matched_fragments": 55,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.07",
                "min_intra_species_ani": "99.07",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000428905.1",
                "gtdb_species": "s__Glaciecola pallidula",
                "ani": 77.6252,
                "matched_fragments": 76,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Glaciecola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_006494365.1",
                "gtdb_species": "s__Alteromonas mangrovi",
                "ani": 77.5732,
                "matched_fragments": 68,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002807665.1",
                "gtdb_species": "s__Alteromonas_E facilis",
                "ani": 77.4525,
                "matched_fragments": 74,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018860635.1",
                "gtdb_species": "s__Aliiglaciecola lipolytica_A",
                "ani": 77.3212,
                "matched_fragments": 64,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Aliiglaciecola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002836745.1",
                "gtdb_species": "s__Glaciecola sp002836745",
                "ani": 77.2915,
                "matched_fragments": 73,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Glaciecola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_902506055.1",
                "gtdb_species": "s__Alteromonas lipotrueae",
                "ani": 77.2678,
                "matched_fragments": 69,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.66",
                "min_intra_species_ani": "99.49",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_001660395.1",
                "gtdb_species": "s__XY-R5 sp001660395",
                "ani": 77.1334,
                "matched_fragments": 53,
                "total_fragments": 1347,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__XY-R5",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Ningiella",
        "ruwaisensis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}