{
    "type": "genome",
    "identifier": "GCF_004798965.1",
    "organism": "Onishia niordana",
    "title": "Onishia niordana",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Universidad de Santiago de Compostela",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004798965.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10791423",
        "wgs_master": "SDSD00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2508711",
        "species_taxid": "2508711",
        "organism_name": "Onishia niordana",
        "infraspecific_name": "strain=ATF 5.4",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/17",
        "asm_name": "ASM479896v1",
        "asm_submitter": "Universidad de Santiago de Compostela",
        "gbrs_paired_asm": "GCA_004798965.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/798/965/GCF_004798965.1_ASM479896v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3681432",
        "genome_size_ungapped": "3681432",
        "gc_percent": "61.000000",
        "replicon_count": "0",
        "scaffold_count": "186",
        "contig_count": "186",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004798965.1-RS_2024_08_07",
        "annotation_date": "2024-08-07",
        "total_gene_count": "3452",
        "protein_coding_gene_count": "3343",
        "non_coding_gene_count": "68",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-17",
    "dateModified": "2019-04-17",
    "datePublished": "2019-04-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Onishia niordana"
        ],
        "sample_taxid": [
            "2508711"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Norway: Bergen"
        ],
        "sample_host_location_id": [],
        "data_size": "1.041 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.38,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3681432",
        "Number of Sequences": "186",
        "Longest Sequences (bp)": "968553",
        "N50 (bp)": "483453",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.8",
        "Number of CDSs": "3266",
        "Average Protein Length": "325.2",
        "Coding Ratio (%)": "86.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Halomonas niordiana",
                "strain": "strain=ATF 5.4",
                "accession": "GCA_004798965.1",
                "taxid": 2508711,
                "species_taxid": 2508711,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1203,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halomonas taeanensis",
                "strain": "strain=BH539",
                "accession": "GCA_900100755.1",
                "taxid": 284577,
                "species_taxid": 284577,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.4277,
                "matched_fragments": 915,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas smyrnensis",
                "strain": "strain=AAD6",
                "accession": "GCA_000265245.2",
                "taxid": 720605,
                "species_taxid": 720605,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6572,
                "matched_fragments": 577,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas denitrificans",
                "strain": "strain=DSM 18045",
                "accession": "GCA_003056305.1",
                "taxid": 370769,
                "species_taxid": 370769,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5102,
                "matched_fragments": 611,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas urmiana",
                "strain": "strain=TBZ3",
                "accession": "GCA_005780185.1",
                "taxid": 490901,
                "species_taxid": 490901,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3812,
                "matched_fragments": 567,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas saccharevitans",
                "strain": "strain=CGMCC 1.6493",
                "accession": "GCA_900116405.1",
                "taxid": 416872,
                "species_taxid": 416872,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2459,
                "matched_fragments": 554,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas aestuarii",
                "strain": "strain=Hb3",
                "accession": "GCA_001886615.1",
                "taxid": 1897729,
                "species_taxid": 1897729,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0547,
                "matched_fragments": 550,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas salipaludis",
                "strain": "strain=WRN001",
                "accession": "GCA_002286975.1",
                "taxid": 2032625,
                "species_taxid": 2032625,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0474,
                "matched_fragments": 586,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas alimentaria",
                "strain": "strain=DSM 15356",
                "accession": "GCA_009902005.1",
                "taxid": 147248,
                "species_taxid": 147248,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7333,
                "matched_fragments": 479,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas campaniensis",
                "strain": "strain=5AG",
                "accession": "GCA_014193375.1",
                "taxid": 213554,
                "species_taxid": 213554,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7189,
                "matched_fragments": 550,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas pantelleriensis",
                "strain": "strain=AAP",
                "accession": "GCA_900102875.1",
                "taxid": 48727,
                "species_taxid": 48727,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6997,
                "matched_fragments": 524,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas pacifica",
                "strain": "strain=NBRC 102220",
                "accession": "GCA_007989625.1",
                "taxid": 77098,
                "species_taxid": 77098,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.674,
                "matched_fragments": 535,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas sulfidoxydans",
                "strain": "strain=MCCC 1A11059",
                "accession": "GCA_017868775.1",
                "taxid": 2733484,
                "species_taxid": 2733484,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.622,
                "matched_fragments": 541,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas ethanolica",
                "strain": "strain=MCCC 1A11081",
                "accession": "GCA_021404305.1",
                "taxid": 2733486,
                "species_taxid": 2733486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6198,
                "matched_fragments": 473,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas aerodenitrificans",
                "strain": "strain=MCCC 1A11058",
                "accession": "GCA_021404405.1",
                "taxid": 2733483,
                "species_taxid": 2733483,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5334,
                "matched_fragments": 490,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas lysinitropha",
                "strain": "strain=3(2)",
                "accession": "GCA_902500215.1",
                "taxid": 2607506,
                "species_taxid": 2607506,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4579,
                "matched_fragments": 495,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas tianxiuensis",
                "strain": "strain=BC-M4-5",
                "accession": "GCA_009834345.1",
                "taxid": 2497861,
                "species_taxid": 2497861,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3997,
                "matched_fragments": 499,
                "total_fragments": 1204,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.38,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004798965.1",
                "gtdb_species": "s__Halomonas_E niordiana",
                "ani": 100.0,
                "matched_fragments": 1203,
                "total_fragments": 1204,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_012062845.1",
                "gtdb_species": "s__Halomonas_E sp012062845",
                "ani": 93.32,
                "matched_fragments": 940,
                "total_fragments": 1204,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003268885.1",
                "gtdb_species": "s__Halomonas_E taeanensis_A",
                "ani": 85.1131,
                "matched_fragments": 939,
                "total_fragments": 1204,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013349955.1",
                "gtdb_species": "s__Halomonas_E taeanensis_B",
                "ani": 84.7259,
                "matched_fragments": 927,
                "total_fragments": 1204,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014840935.1",
                "gtdb_species": "s__Halomonas_E sp014840935",
                "ani": 84.6084,
                "matched_fragments": 848,
                "total_fragments": 1204,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900100755.1",
                "gtdb_species": "s__Halomonas_E taeanensis",
                "ani": 84.4296,
                "matched_fragments": 914,
                "total_fragments": 1204,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.15",
                "min_intra_species_ani": "98.15",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Onishia",
        "niordana"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}