{ "type": "genome", "identifier": "GCF_004798975.1", "organism": "Pseudofulvimonas gallinarii", "title": "Pseudofulvimonas gallinarii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CSIR-Institute of Microbial Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004798975.1", "bioproject": "PRJNA224116", "biosample": "SAMN06368458", "wgs_master": "MWQP00000000.1", "refseq_category": "na", "taxid": "634155", "species_taxid": "634155", "organism_name": "Pseudofulvimonas gallinarii", "infraspecific_name": "strain=DSM 21944", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/17", "asm_name": "ASM479897v1", "asm_submitter": "CSIR-Institute of Microbial Technology", "gbrs_paired_asm": "GCA_004798975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/798/975/GCF_004798975.1_ASM479897v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3483742", "genome_size_ungapped": "3483742", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "127", "contig_count": "127", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004798975.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "2996", "protein_coding_gene_count": "2882", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-17", "dateModified": "2019-04-17", "datePublished": "2019-04-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudofulvimonas gallinarii" ], "sample_taxid": [ "634155" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "0.954 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.14, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3483742", "Number of Sequences": "127", "Longest Sequences (bp)": "286055", "N50 (bp)": "99644", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.5", "Number of CDSs": "2891", "Average Protein Length": "351.2", "Coding Ratio (%)": "87.4", "Number of rRNAs": "4", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudofulvimonas gallinarii", "strain": "strain=DSM 21944", "accession": "GCA_004798975.1", "taxid": 634155, "species_taxid": 634155, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1105, 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"Vulcaniibacterium thermophilum", "strain": "strain=KCTC 32020", "accession": "GCA_007923255.1", "taxid": 1169913, "species_taxid": 1169913, "relation_to_type": "type", "validated": true, "ani": 78.4606, "matched_fragments": 353, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter chinensis", "strain": "strain=TLK-CK17", "accession": "GCA_021725675.1", "taxid": 2912247, "species_taxid": 2912247, "relation_to_type": "type", "validated": true, "ani": 78.3658, "matched_fragments": 339, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas wenzhouensis", "strain": "strain=YD-1", "accession": "GCA_007859305.1", "taxid": 2599615, "species_taxid": 2599615, "relation_to_type": "type", "validated": true, "ani": 78.361, "matched_fragments": 355, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas weifangensis", "strain": "strain=WF-2", "accession": "GCA_003416885.1", "taxid": 2303539, "species_taxid": 2303539, "relation_to_type": "type", "validated": true, "ani": 78.2847, "matched_fragments": 340, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas yindakuii", "strain": "strain=S-1072", "accession": "GCA_004803715.2", "taxid": 2565782, "species_taxid": 2565782, "relation_to_type": "type", "validated": true, "ani": 78.2763, "matched_fragments": 335, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas massiliensis", "strain": "strain=SN8", "accession": "GCA_900018785.1", "taxid": 1720302, "species_taxid": 1720302, "relation_to_type": "type", "validated": true, "ani": 78.2536, "matched_fragments": 347, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tahibacter caeni", "strain": "strain=BUT-6", "accession": "GCA_024609805.1", "taxid": 1453545, 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true, "ani": 77.765, "matched_fragments": 239, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rudaea cellulosilytica", "strain": "strain=DSM 22992", "accession": "GCA_000378125.1", "taxid": 540746, "species_taxid": 540746, "relation_to_type": "type", "validated": true, "ani": 77.639, "matched_fragments": 239, "total_fragments": 1110, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.14, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004343305.1", "gtdb_species": "s__Pseudofulvimonas gallinarii", "ani": 99.9907, "matched_fragments": 1099, "total_fragments": 1110, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__UBA2363;g__Pseudofulvimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", 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"-" }, { "accession": "GCF_010093385.1", "gtdb_species": "s__Pseudoxanthomonas_A mexicana", "ani": 78.5712, "matched_fragments": 311, "total_fragments": 1110, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudoxanthomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.97", "min_intra_species_ani": "96.88", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_004803715.2", "gtdb_species": "s__Luteimonas yindakuii", "ani": 78.2878, "matched_fragments": 334, "total_fragments": 1110, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.11", "min_intra_species_ani": "98.11", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { 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