{ "type": "genome", "identifier": "GCF_004799285.1", "organism": "Aliigemmobacter aestuarii", "title": "Aliigemmobacter aestuarii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Chung Hsing University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004799285.1", "bioproject": "PRJNA224116", "biosample": "SAMN11382772", "wgs_master": "SSND00000000.1", "refseq_category": "reference genome", "taxid": "1445661", "species_taxid": "1445661", "organism_name": "Aliigemmobacter aestuarii", "infraspecific_name": "strain=CC-PW-75", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/17", "asm_name": "ASM479928v1", "asm_submitter": "National Chung Hsing University", "gbrs_paired_asm": "GCA_004799285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/799/285/GCF_004799285.1_ASM479928v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3758696", "genome_size_ungapped": "3758696", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004799285.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3589", "protein_coding_gene_count": "3518", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-17", "dateModified": "2019-04-17", "datePublished": "2019-04-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Aliigemmobacter aestuarii" ], "sample_taxid": [ "1445661" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "1.023 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3758696", "Number of Sequences": "12", "Longest Sequences (bp)": "1829759", "N50 (bp)": "519418", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.2", "Number of CDSs": "3548", "Average Protein Length": "323.6", "Coding Ratio (%)": "91.6", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gemmobacter caeruleus", "strain": "strain=N8", "accession": "GCA_008271655.1", "taxid": 2595004, "species_taxid": 2595004, "relation_to_type": "type", "validated": true, "ani": 80.4752, "matched_fragments": 681, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter aquatilis", "strain": "strain=DSM 3857", "accession": "GCA_900110025.1", "taxid": 933059, "species_taxid": 933059, "relation_to_type": "type", "validated": true, "ani": 80.2213, "matched_fragments": 674, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 80.1972, "matched_fragments": 681, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_019130055.1", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 80.189, "matched_fragments": 683, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter lutimaris", "strain": "strain=YJ-T1-11", "accession": "GCA_003570715.1", "taxid": 2306023, "species_taxid": 2306023, "relation_to_type": "type", "validated": true, "ani": 80.1523, "matched_fragments": 688, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter changlensis", "strain": "strain=DSM 18774", "accession": "GCA_003254335.1", "taxid": 402884, "species_taxid": 402884, "relation_to_type": "type", "validated": true, "ani": 80.1168, "matched_fragments": 626, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter caeni", "strain": "strain=DSM 21823", "accession": "GCA_003054195.1", "taxid": 589035, "species_taxid": 589035, "relation_to_type": "type", "validated": true, "ani": 80.0996, "matched_fragments": 661, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter calidifons", "strain": "strain=M37P", "accession": "GCA_011174775.1", "taxid": 2715277, "species_taxid": 2715277, "relation_to_type": "type", "validated": true, "ani": 80.0656, "matched_fragments": 645, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter caeni", "strain": "strain=CGMCC 1.7745", "accession": "GCA_007830625.1", "taxid": 589035, "species_taxid": 589035, "relation_to_type": "type", "validated": true, "ani": 80.0513, "matched_fragments": 670, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter lanyuensis", "strain": "strain=KCTC 23714", "accession": "GCA_014652355.1", "taxid": 1054497, "species_taxid": 1054497, "relation_to_type": "type", "validated": true, "ani": 80.0477, "matched_fragments": 597, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter flagellatus", "strain": "strain=SYSU G03088", "accession": "GCA_008271465.1", "taxid": 2593021, "species_taxid": 2593021, "relation_to_type": "type", "validated": true, "ani": 79.9977, "matched_fragments": 664, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter ruber", "strain": "strain=CCP-1", "accession": "GCA_009908315.1", "taxid": 1985673, "species_taxid": 1985673, "relation_to_type": "type", "validated": true, "ani": 79.9611, "matched_fragments": 653, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter ovatus", "strain": "strain=JA234", "accession": "GCA_900207575.1", "taxid": 439529, "species_taxid": 439529, "relation_to_type": "type", "validated": true, "ani": 79.8578, "matched_fragments": 580, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter azotoformans", "strain": "strain=KA25", "accession": "GCA_003050905.1", "taxid": 43057, "species_taxid": 43057, "relation_to_type": "type", "validated": true, "ani": 79.6698, "matched_fragments": 535, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", "accession": "GCA_007668225.1", "taxid": 2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 79.6422, "matched_fragments": 540, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter fulva", "strain": "strain=con5", "accession": "GCA_018798885.1", "taxid": 2840474, "species_taxid": 2840474, "relation_to_type": "type", "validated": true, "ani": 79.5629, "matched_fragments": 659, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter aquaticus", "strain": "strain=A1-9", "accession": "GCA_007859075.1", "taxid": 490185, "species_taxid": 490185, "relation_to_type": "type", "validated": true, "ani": 79.5606, "matched_fragments": 528, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter aquaticus", "strain": "strain=CGMCC 1.7029", "accession": "GCA_014645295.1", "taxid": 490185, "species_taxid": 490185, "relation_to_type": "type", "validated": true, "ani": 79.5305, "matched_fragments": 530, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola algicola", "strain": "strain=ETT8", "accession": "GCA_010915705.1", "taxid": 2709381, "species_taxid": 2709381, "relation_to_type": "type", "validated": true, "ani": 79.4611, "matched_fragments": 581, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allgaiera indica", "strain": "strain=CGMCC 1.10859", "accession": "GCA_014653075.1", "taxid": 765699, "species_taxid": 765699, "relation_to_type": "type", "validated": true, "ani": 79.0797, "matched_fragments": 515, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allgaiera indica", "strain": "strain=DSM 24802", "accession": "GCA_900106675.1", "taxid": 765699, "species_taxid": 765699, "relation_to_type": "type", "validated": true, "ani": 79.0486, "matched_fragments": 520, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum strictum", "strain": "strain=DSM 11289", "accession": "GCA_009649175.1", "taxid": 58314, "species_taxid": 58314, "relation_to_type": "type", "validated": true, "ani": 79.0315, "matched_fragments": 502, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum steppense", "strain": "strain=DSM 21153", "accession": "GCA_004339675.1", "taxid": 540251, "species_taxid": 540251, "relation_to_type": "type", "validated": true, "ani": 78.9303, "matched_fragments": 500, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 78.8948, "matched_fragments": 502, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum euryhalinum", "strain": "strain=DSM 4868", "accession": "GCA_004342445.1", "taxid": 35805, "species_taxid": 35805, "relation_to_type": "type", "validated": true, "ani": 78.887, "matched_fragments": 503, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004799285.1", "gtdb_species": "s__Gemmobacter_D aestuarii", "ani": 100.0, "matched_fragments": 1246, "total_fragments": 1247, "gtdb_taxonomy": 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