{
    "type": "genome",
    "identifier": "GCF_004799645.1",
    "organism": "Natronorubrum bangense",
    "title": "Natronorubrum bangense",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Wuhan University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004799645.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09711300",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "61858",
        "species_taxid": "61858",
        "organism_name": "Natronorubrum bangense",
        "infraspecific_name": "strain=JCM 10635",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/18",
        "asm_name": "ASM479964v1",
        "asm_submitter": "Wuhan University",
        "gbrs_paired_asm": "GCA_004799645.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/799/645/GCF_004799645.1_ASM479964v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "4382412",
        "genome_size_ungapped": "4382412",
        "gc_percent": "60.500000",
        "replicon_count": "5",
        "scaffold_count": "5",
        "contig_count": "5",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004799645.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "4351",
        "protein_coding_gene_count": "4187",
        "non_coding_gene_count": "83",
        "pubmed_id": "30975999"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-18",
    "dateModified": "2019-04-18",
    "datePublished": "2019-04-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Natronorubrum bangense"
        ],
        "sample_taxid": [
            "61858"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.221 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 28.79,
        "strain_heterogeneity": 87.5,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4382412",
        "Number of Sequences": "5",
        "Longest Sequences (bp)": "3079186",
        "N50 (bp)": "3079186",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.6",
        "Number of CDSs": "4247",
        "Average Protein Length": "289.6",
        "Coding Ratio (%)": "84.2",
        "Number of rRNAs": "17",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Natronorubrum bangense",
                "strain": "strain=JCM 10635",
                "accession": "GCA_004799645.1",
                "taxid": 61858,
                "species_taxid": 61858,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1404,
                "total_fragments": 1458,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Natronorubrum bangense",
                "strain": "strain=JCM 10635",
                "accession": "GCA_000337715.1",
                "taxid": 61858,
                "species_taxid": 61858,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.942,
                "matched_fragments": 1293,
                "total_fragments": 1458,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Natronorubrum sulfidifaciens",
                "strain": "strain=JCM 14089",
                "accession": "GCA_000337735.1",
                "taxid": 388259,
                "species_taxid": 388259,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.8303,
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                "total_fragments": 1458,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natronorubrum aibiense",
                "strain": "strain=7-3",
                "accession": "GCA_009392895.1",
                "taxid": 348826,
                "species_taxid": 348826,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6839,
                "matched_fragments": 940,
                "total_fragments": 1458,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natronorubrum tibetense",
                "strain": "strain=GA33",
                "accession": "GCA_000383975.1",
                "taxid": 63128,
                "species_taxid": 63128,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6632,
                "matched_fragments": 850,
                "total_fragments": 1458,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natronorubrum halophilum",
                "strain": "strain=SHR37",
                "accession": "GCA_003670115.1",
                "taxid": 1702106,
                "species_taxid": 1702106,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5073,
                "matched_fragments": 774,
                "total_fragments": 1458,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natronorubrum halalkaliphilum",
                "strain": "strain=JWXQ-INN-674",
                "accession": "GCA_009834785.1",
                "taxid": 2691917,
                "species_taxid": 2691917,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3587,
                "matched_fragments": 781,
                "total_fragments": 1458,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 28.79,
            "strain_heterogeneity": 87.5
        },
        "gtdb_result": [
            {
                "accession": "GCF_004799645.1",
                "gtdb_species": "s__Natronorubrum bangense",
                "ani": 100.0,
                "matched_fragments": 1404,
                "total_fragments": 1458,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.90",
                "min_intra_species_ani": "95.84",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000337735.1",
                "gtdb_species": "s__Natronorubrum sulfidifaciens",
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                "matched_fragments": 926,
                "total_fragments": 1458,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900156475.1",
                "gtdb_species": "s__Natronorubrum thiooxidans",
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                "matched_fragments": 972,
                "total_fragments": 1458,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009392895.1",
                "gtdb_species": "s__Natronorubrum aibiense",
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                "matched_fragments": 944,
                "total_fragments": 1458,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900100335.1",
                "gtdb_species": "s__Natronorubrum texcoconense",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003670115.1",
                "gtdb_species": "s__Natronorubrum sp003670115",
                "ani": 81.4817,
                "matched_fragments": 776,
                "total_fragments": 1458,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.42",
                "min_intra_species_ani": "97.42",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009834785.1",
                "gtdb_species": "s__Natronorubrum halalkaliphilum",
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                "matched_fragments": 781,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.267,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 43.125,
        "optimum_ph": 9.25,
        "genome_size": 4111275.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_genome_taxon": [
        "Natronorubrum",
        "bangense"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}