{
    "type": "genome",
    "identifier": "GCF_004799685.1",
    "organism": "Halobellus limi",
    "title": "Halobellus limi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Wuhan University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_004799685.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09711302",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "699433",
        "species_taxid": "699433",
        "organism_name": "Halobellus limi",
        "infraspecific_name": "strain=CGMCC 1.10331",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/18",
        "asm_name": "ASM479968v1",
        "asm_submitter": "Wuhan University",
        "gbrs_paired_asm": "GCA_004799685.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/799/685/GCF_004799685.1_ASM479968v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "3749890",
        "genome_size_ungapped": "3749890",
        "gc_percent": "66.000000",
        "replicon_count": "4",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_004799685.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "3728",
        "protein_coding_gene_count": "3584",
        "non_coding_gene_count": "59",
        "pubmed_id": "30975999"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-18",
    "dateModified": "2019-04-18",
    "datePublished": "2019-04-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halobellus limi"
        ],
        "sample_taxid": [
            "699433"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.018 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3749890",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "2958395",
        "N50 (bp)": "2958395",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.9",
        "Number of CDSs": "3688",
        "Average Protein Length": "291.8",
        "Coding Ratio (%)": "86.1",
        "Number of rRNAs": "6",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Halobellus limi",
                "strain": "strain=CGMCC 1.10331",
                "accession": "GCA_004799685.1",
                "taxid": 699433,
                "species_taxid": 699433,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1248,
                "total_fragments": 1248,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halobellus limi",
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                "accession": "GCA_900108165.1",
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                "species_taxid": 699433,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9851,
                "matched_fragments": 1239,
                "total_fragments": 1248,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halobellus rarus",
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                "accession": "GCA_024494595.1",
                "taxid": 1126237,
                "species_taxid": 1126237,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobellus litoreus",
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                "accession": "GCA_024464595.1",
                "taxid": 755310,
                "species_taxid": 755310,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 927,
                "total_fragments": 1248,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobellus rufus",
                "strain": "strain=CBA1103",
                "accession": "GCA_000739575.1",
                "taxid": 1448860,
                "species_taxid": 1448860,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9394,
                "matched_fragments": 767,
                "total_fragments": 1248,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobellus captivus",
                "strain": "strain=ZY21",
                "accession": "GCA_007655485.1",
                "taxid": 2592614,
                "species_taxid": 2592614,
                "relation_to_type": "type",
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                "ani": 84.5389,
                "matched_fragments": 769,
                "total_fragments": 1248,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_004799685.1",
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                "matched_fragments": 1248,
                "total_fragments": 1248,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobellus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_000739575.1",
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                "total_fragments": 1248,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobellus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_007655485.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobellus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003665925.1",
                "gtdb_species": "s__Halobellus sp003665925",
                "ani": 84.1754,
                "matched_fragments": 732,
                "total_fragments": 1248,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobellus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003665935.1",
                "gtdb_species": "s__Halobellus sp003665935",
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                "matched_fragments": 669,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halobellus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 37.0,
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        "genome_size": 3735964.0,
        "gc_content": null,
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        "rRNA16S_genes": null,
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        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 1.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Halobellus",
        "limi"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}