{ "type": "genome", "identifier": "GCF_004801295.1", "organism": "Pseudothauera nasutitermitis", "title": "Pseudothauera nasutitermitis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nation Chung Hsing University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004801295.1", "bioproject": "PRJNA224116", "biosample": "SAMN11382581", "wgs_master": "SSOC00000000.1", "refseq_category": "reference genome", "taxid": "2565930", "species_taxid": "2565930", "organism_name": "Pseudothauera nasutitermitis", "infraspecific_name": "strain=CC-YHH838", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/20", "asm_name": "ASM480129v1", "asm_submitter": "Nation Chung Hsing University", "gbrs_paired_asm": "GCA_004801295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/801/295/GCF_004801295.1_ASM480129v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4723750", "genome_size_ungapped": "4723750", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004801295.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "4388", "protein_coding_gene_count": "4302", "non_coding_gene_count": "57", "pubmed_id": "32222862" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-20", "dateModified": "2019-04-20", "datePublished": "2019-04-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudothauera nasutitermitis" ], "sample_taxid": [ "2565930" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "1.280 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4723750", "Number of Sequences": "20", "Longest Sequences (bp)": "855588", "N50 (bp)": "620892", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.5", "Number of CDSs": "4315", "Average Protein Length": "333.3", "Coding Ratio (%)": "91.3", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Azoarcus nasutitermitis", "strain": "strain=CC-YHH838", "accession": "GCA_004801295.1", "taxid": 2565930, "species_taxid": 2565930, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1562, "total_fragments": 1564, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Azoarcus rhizosphaerae", "strain": "strain=CC-YHH848", "accession": "GCA_004801305.1", "taxid": 2565932, "species_taxid": 2565932, "relation_to_type": "type", "validated": true, "ani": 85.3456, "matched_fragments": 911, "total_fragments": 1564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=47Lol = DSM 12138", "accession": "GCA_000310205.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 82.609, "matched_fragments": 722, "total_fragments": 1564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=DSM 12138", "accession": "GCA_000621305.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 82.5149, "matched_fragments": 746, "total_fragments": 1564, "ani_threshold": 95, "status": 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"strain=DSM 12121", "accession": "GCA_004361735.1", "taxid": 29545, "species_taxid": 29545, "relation_to_type": "type", "validated": true, "ani": 81.2969, "matched_fragments": 758, "total_fragments": 1564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera humireducens", "strain": "strain=SgZ-1", "accession": "GCA_001051995.2", "taxid": 1134435, "species_taxid": 1134435, "relation_to_type": "type", "validated": true, "ani": 81.261, "matched_fragments": 623, "total_fragments": 1564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus indigens", "strain": "strain=VB32", "accession": "GCA_012910835.1", "taxid": 29545, "species_taxid": 29545, "relation_to_type": "type", "validated": true, "ani": 81.2452, "matched_fragments": 753, "total_fragments": 1564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera propionica", "strain": "strain=KNDSS-Mac4", "accession": "GCA_002245655.1", "taxid": 2019431, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum buckelii", "strain": "strain=U120", "accession": "GCA_012910785.2", "taxid": 200254, "species_taxid": 200254, "relation_to_type": "type", "validated": true, "ani": 79.6751, "matched_fragments": 478, "total_fragments": 1564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum anaerobium", "strain": "strain=LuFRes1", "accession": "GCA_012910705.2", "taxid": 182180, "species_taxid": 182180, "relation_to_type": "type", "validated": true, "ani": 79.6388, "matched_fragments": 538, "total_fragments": 1564, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrogeniibacter aestuarii", "strain": "strain=H1-1-2A", "accession": "GCA_017309585.1", "taxid": 2815343, "species_taxid": 2815343, "relation_to_type": "type", "validated": true, "ani": 78.4923, "matched_fragments": 372, "total_fragments": 1564, "ani_threshold": 95, "status": "below_threshold" } ], 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