{ "type": "genome", "identifier": "GCF_004802515.1", "organism": "Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604", "title": "Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004802515.1", "bioproject": "PRJNA224116", "biosample": "SAMN02630781", "wgs_master": "JALP00000000.1", "refseq_category": "reference genome", "taxid": "1218173", "species_taxid": "1445", "organism_name": "Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604", "infraspecific_name": "strain=CGMCC 1.3604", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/22", "asm_name": "ASM480251v1", "asm_submitter": "Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_004802515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/802/515/GCF_004802515.1_ASM480251v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4210001", "genome_size_ungapped": "4209681", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "402", "contig_count": "402", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004802515.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4115", "protein_coding_gene_count": "4028", "non_coding_gene_count": "25", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-22", "dateModified": "2019-04-22", "datePublished": "2019-04-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Alkalihalobacillus alcalophilus ATCC 27647 = CGMCC 1.3604" ], "sample_taxid": [ "1218173" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Unknown" ], "sample_host_location_id": [], "data_size": "1.199 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4210001", "Number of Sequences": "402", "Longest Sequences (bp)": "68210", "N50 (bp)": "17203", "Gap Ratio (%)": "0.007601", "GCcontent (%)": "37.2", "Number of CDSs": "4078", "Average Protein Length": "283.9", "Coding Ratio (%)": "82.5", "Number of rRNAs": "3", "Number of tRNAs": "17", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alkalihalobacillus alcalophilus", "strain": "strain=CGMCC 1.3604", "accession": "GCA_004802515.1", "taxid": 1445, "species_taxid": 1445, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1177, "total_fragments": 1200, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alkalihalobacillus alcalophilus", "strain": "strain=AV1934", "accession": "GCA_000292245.2", "taxid": 1445, "species_taxid": 1445, "relation_to_type": "type", "validated": true, "ani": 99.9871, "matched_fragments": 1180, "total_fragments": 1200, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alkalihalobacillus okhensis", "strain": "strain=Kh10-101", "accession": "GCA_000787375.1", "taxid": 333138, "species_taxid": 333138, "relation_to_type": "type", "validated": true, "ani": 80.9043, "matched_fragments": 181, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkalihalobacillus trypoxylicola", "strain": "strain=NBRC 102646", "accession": "GCA_001592025.1", "taxid": 519424, "species_taxid": 519424, "relation_to_type": "type", "validated": true, "ani": 78.0942, "matched_fragments": 233, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkalihalobacillus trypoxylicola", "strain": "strain=KCTC 13244", "accession": "GCA_001590785.1", "taxid": 519424, "species_taxid": 519424, "relation_to_type": "type", "validated": true, "ani": 78.046, "matched_fragments": 244, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkalihalobacillus nanhaiisediminis", "strain": "strain=CGMCC 1.10116", "accession": "GCA_007830185.1", "taxid": 688079, "species_taxid": 688079, "relation_to_type": "type", "validated": true, "ani": 77.0043, "matched_fragments": 148, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerobacillus alkaliphilus", "strain": "strain=B16-10", "accession": "GCA_004116265.1", "taxid": 1548597, "species_taxid": 1548597, "relation_to_type": "type", "validated": true, "ani": 76.6795, "matched_fragments": 70, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerobacillus isosaccharinicus", "strain": "strain=NB2006", "accession": "GCA_001866075.3", "taxid": 1532552, "species_taxid": 1532552, "relation_to_type": "type", "validated": true, "ani": 76.6696, "matched_fragments": 85, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alkalihalobacterium elongatum", "strain": "strain=MEB199", "accession": "GCA_019024285.1", "taxid": 2675466, "species_taxid": 2675466, "relation_to_type": "type", "validated": true, "ani": 76.5839, "matched_fragments": 102, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Alkalihalobacillus", "alcalophilus", "ATCC", "27647", "=", "CGMCC", "1.3604" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }