{ "type": "genome", "identifier": "GCF_004803505.1", "organism": "Arthrobacter echini", "title": "Arthrobacter echini", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004803505.1", "bioproject": "PRJNA224116", "biosample": "SAMN11445397", "wgs_master": "SSWH00000000.1", "refseq_category": "reference genome", "taxid": "1529066", "species_taxid": "1529066", "organism_name": "Arthrobacter echini", "infraspecific_name": "strain=AM23", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/22", "asm_name": "ASM480350v1", "asm_submitter": "Institute of Microbiology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_004803505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/803/505/GCF_004803505.1_ASM480350v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3176728", "genome_size_ungapped": "3176728", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "41", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004803505.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "2995", "protein_coding_gene_count": "2895", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-22", "dateModified": "2019-04-22", "datePublished": "2019-04-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Arthrobacter echini" ], "sample_taxid": [ "1529066" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.875 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3176728", "Number of Sequences": "41", "Longest Sequences (bp)": "500656", "N50 (bp)": "238543", "Gap Ratio (%)": "0.000189", "GCcontent (%)": "67.0", "Number of CDSs": "3003", "Average Protein Length": "315.3", "Coding Ratio (%)": "89.4", "Number of rRNAs": "2", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arthrobacter echini", "strain": "strain=AM23", "accession": "GCA_004803505.1", "taxid": 1529066, "species_taxid": 1529066, 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"matched_fragments": 609, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter bussei", "strain": "strain=KR32", "accession": "GCA_009377195.2", "taxid": 2594179, "species_taxid": 2594179, "relation_to_type": "type", "validated": true, "ani": 81.2162, "matched_fragments": 611, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter agilis", "strain": "strain=DSM 20550", "accession": "GCA_006494655.1", "taxid": 37921, "species_taxid": 37921, "relation_to_type": "type", "validated": true, "ani": 81.1703, "matched_fragments": 581, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter cheniae", "strain": "strain=Hz2", "accession": "GCA_003602275.1", "taxid": 1258888, "species_taxid": 1258888, "relation_to_type": "type", "validated": true, "ani": 80.7485, "matched_fragments": 586, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter zhaoguopingii", "strain": "strain=J391", "accession": "GCA_009828595.1", "taxid": 2681491, "species_taxid": 2681491, "relation_to_type": "type", "validated": true, "ani": 79.4479, "matched_fragments": 417, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter crusticola", "strain": "strain=SLN-3", "accession": "GCA_004357995.1", "taxid": 2547960, "species_taxid": 2547960, "relation_to_type": "type", "validated": true, "ani": 79.3567, "matched_fragments": 419, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_018866305.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 78.031, "matched_fragments": 242, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_017898065.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 77.9977, "matched_fragments": 291, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_018622995.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 77.9768, "matched_fragments": 294, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004803505.1", "gtdb_species": "s__Arthrobacter_D echini", "ani": 100.0, "matched_fragments": 1037, "total_fragments": 1037, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_D", 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"N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.105, "cell_length": 0.019, "doubling_h": null, "growth_tmp": 20.0, "optimum_tmp": 26.833, "optimum_ph": 7.7, "genome_size": 4207472.204, "gc_content": 64.7, "coding_genes": 3997.0, "rRNA16S_genes": 7.0, "tRNA_genes": 50.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.235, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.03, "aerobic_respiration": 0.969, "mesophilic_range_tmp": 0.8, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.2, "bacillus_cell_shape": 0.466, "coccus_cell_shape": 0.333, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.2, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Arthrobacter", "echini" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }