{ "type": "genome", "identifier": "GCF_004804355.1", "organism": "Algibacter onchidii", "title": "Algibacter onchidii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shenzhen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004804355.1", "bioproject": "PRJNA224116", "biosample": "SAMN11312096", "wgs_master": "SRWZ00000000.1", "refseq_category": "reference genome", "taxid": "2562860", "species_taxid": "2562860", "organism_name": "Algibacter onchidii", "infraspecific_name": "strain=XY-114", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/19", "asm_name": "ASM480435v1", "asm_submitter": "Shenzhen University", "gbrs_paired_asm": "GCA_004804355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/804/355/GCF_004804355.1_ASM480435v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3416837", "genome_size_ungapped": "3416837", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004804355.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2992", "protein_coding_gene_count": "2932", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-19", "dateModified": "2019-04-19", "datePublished": "2019-04-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Algibacter onchidii" ], "sample_taxid": [ "2562860" ], "sample_host_organism": [ "Nudibranchia" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:DaPeng Bay" ], "sample_host_location_id": [], "data_size": "0.961 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3416837", "Number of Sequences": "12", "Longest Sequences (bp)": "808256", "N50 (bp)": "532815", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.9", "Number of CDSs": "2940", "Average Protein Length": "350.3", "Coding Ratio (%)": "90.4", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Algibacter onchidii", "strain": "strain=XY-114", "accession": "GCA_004804355.1", "taxid": 2562860, "species_taxid": 2562860, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1134, "total_fragments": 1134, 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2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 78.1811, "matched_fragments": 301, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 78.1511, "matched_fragments": 339, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola maritimus", "strain": "strain=1505", "accession": "GCA_008056315.1", "taxid": 2591822, "species_taxid": 2591822, "relation_to_type": "type", "validated": true, "ani": 78.0062, "matched_fragments": 344, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", 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