{ "type": "genome", "identifier": "GCF_004834005.1", "organism": "Niastella caeni", "title": "Niastella caeni", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nanjing Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004834005.1", "bioproject": "PRJNA224116", "biosample": "SAMN11430867", "wgs_master": "STFF00000000.1", "refseq_category": "reference genome", "taxid": "2569763", "species_taxid": "2569763", "organism_name": "Niastella caeni", "infraspecific_name": "strain=HX-16-21", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/23", "asm_name": "ASM483400v1", "asm_submitter": "Nanjing Agricultural University", "gbrs_paired_asm": "GCA_004834005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/834/005/GCF_004834005.1_ASM483400v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8097302", "genome_size_ungapped": "8097272", "gc_percent": "43.500000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004834005.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "6184", "protein_coding_gene_count": "6108", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-23", "dateModified": "2019-04-23", "datePublished": "2019-04-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Niastella caeni" ], "sample_taxid": [ "2569763" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:NanJing" ], "sample_host_location_id": [], "data_size": "2.288 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8097302", "Number of Sequences": "17", "Longest Sequences (bp)": "1926258", "N50 (bp)": "725285", "Gap Ratio (%)": "0.000370", "GCcontent (%)": "43.5", "Number of CDSs": "6061", "Average Protein Length": "379.1", "Coding Ratio (%)": "85.1", "Number of rRNAs": "1", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Niastella caeni", "strain": "strain=HX-16-21", "accession": "GCA_004834005.1", "taxid": 2569763, "species_taxid": 2569763, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2689, "total_fragments": 2691, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Niastella vici", "strain": "strain=DJ57", "accession": "GCA_002077945.1", "taxid": 1703345, "species_taxid": 1703345, "relation_to_type": "type", "validated": true, "ani": 82.157, "matched_fragments": 1671, "total_fragments": 2691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella populi", "strain": "strain=CCTCC AB 208238", "accession": "GCA_002078015.1", "taxid": 550983, "species_taxid": 550983, "relation_to_type": "type", "validated": true, "ani": 81.119, "matched_fragments": 1414, "total_fragments": 2691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella yeongjuensis", "strain": "strain=DSM 17621", "accession": "GCA_900110245.1", "taxid": 354355, "species_taxid": 354355, "relation_to_type": "type", "validated": true, "ani": 80.7852, "matched_fragments": 1254, "total_fragments": 2691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella yeongjuensis", "strain": "strain=DSM 17621", "accession": "GCA_002077935.1", "taxid": 354355, "species_taxid": 354355, "relation_to_type": "type", "validated": true, "ani": 80.7402, "matched_fragments": 1259, "total_fragments": 2691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella soli", "strain": "strain=MAH-29", "accession": "GCA_017742245.1", "taxid": 2821487, "species_taxid": 2821487, "relation_to_type": "type", "validated": true, "ani": 80.717, "matched_fragments": 1282, "total_fragments": 2691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella koreensis", "strain": "strain=GR20-10", "accession": "GCA_000246855.1", "taxid": 354356, "species_taxid": 354356, "relation_to_type": "type", "validated": true, "ani": 80.6041, "matched_fragments": 1353, "total_fragments": 2691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella koreensis", "strain": "strain=DSM 17620", "accession": "GCA_002077985.1", "taxid": 354356, "species_taxid": 354356, "relation_to_type": "type", "validated": true, "ani": 80.4991, "matched_fragments": 1362, "total_fragments": 2691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Filimonas effusa", "strain": "strain=TTM-71", "accession": "GCA_004118675.1", "taxid": 2508721, "species_taxid": 2508721, "relation_to_type": "type", "validated": true, "ani": 76.094, "matched_fragments": 93, "total_fragments": 2691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter petaseus", "strain": "strain=NBRC 106054", "accession": "GCA_000974785.1", "taxid": 549295, "species_taxid": 549295, "relation_to_type": "type", "validated": true, "ani": 76.0329, "matched_fragments": 89, "total_fragments": 2691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter cheonanensis", "strain": "strain=WS16", "accession": "GCA_022352215.1", "taxid": 1442385, "species_taxid": 1442385, "relation_to_type": "type", "validated": true, "ani": 76.0164, "matched_fragments": 103, "total_fragments": 2691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Panacibacter ginsenosidivorans", "strain": "strain=Gsoil1550", "accession": "GCA_007971225.1", "taxid": 1813871, "species_taxid": 1813871, "relation_to_type": "type", "validated": true, "ani": 75.9091, "matched_fragments": 86, "total_fragments": 2691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niabella hibiscisoli", "strain": "strain=THG-DN5.5", "accession": "GCA_022512515.1", "taxid": 1825928, "species_taxid": 1825928, "relation_to_type": "type", "validated": true, "ani": 75.7801, "matched_fragments": 75, "total_fragments": 2691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga hostae", "strain": "strain=2R12", "accession": "GCA_018224885.1", "taxid": 2831022, "species_taxid": 2831022, "relation_to_type": "type", "validated": true, "ani": 75.5398, "matched_fragments": 82, "total_fragments": 2691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferruginibacter albus", "strain": "strain=KIS38-8", "accession": "GCA_020042285.1", "taxid": 2875540, "species_taxid": 2875540, "relation_to_type": "type", "validated": true, "ani": 75.5111, "matched_fragments": 58, "total_fragments": 2691, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004834005.1", "gtdb_species": "s__Niastella caeni", "ani": 100.0, "matched_fragments": 2689, "total_fragments": 2691, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Niastella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { 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"gc_content": 44.95, "coding_genes": 7160.333, "rRNA16S_genes": 3.0, "tRNA_genes": 55.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 1.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Niastella", "caeni" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }