{ "type": "genome", "identifier": "GCF_004916975.1", "organism": "Paenibacillus dokdonensis", "title": "Paenibacillus dokdonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "KRIBB", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004916975.1", "bioproject": "PRJNA224116", "biosample": "SAMN11394124", "wgs_master": "STGQ00000000.1", "refseq_category": "reference genome", "taxid": "2567944", "species_taxid": "2567944", "organism_name": "Paenibacillus dokdonensis", "infraspecific_name": "strain=YH-JAE5", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/26", "asm_name": "ASM491697v1", "asm_submitter": "KRIBB", "gbrs_paired_asm": "GCA_004916975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/916/975/GCF_004916975.1_ASM491697v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6476225", "genome_size_ungapped": "6476099", "gc_percent": "47.500000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004916975.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "5909", "protein_coding_gene_count": "5721", "non_coding_gene_count": "96", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-26", "dateModified": "2019-04-26", "datePublished": "2019-04-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus dokdonensis" ], "sample_taxid": [ "2567944" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Dok-do island" ], "sample_host_location_id": [], "data_size": "1.845 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6476225", "Number of Sequences": "5", "Longest Sequences (bp)": "3949778", "N50 (bp)": "3949778", "Gap Ratio (%)": "0.002007", "GCcontent (%)": "47.4", "Number of CDSs": "5921", "Average Protein Length": "315.2", "Coding Ratio (%)": "86.5", "Number of rRNAs": "16", "Number of tRNAs": "75", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus dokdonensis", "strain": "strain=YH-JAE5", "accession": "GCA_004916975.1", "taxid": 2567944, "species_taxid": 2567944, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2157, "total_fragments": 2157, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus chibensis", "strain": "strain=NBRC 15958", "accession": "GCA_004001045.1", "taxid": 59846, "species_taxid": 59846, "relation_to_type": "type", "validated": true, "ani": 82.5048, "matched_fragments": 1187, "total_fragments": 2157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus rhizosphaerae", "strain": "strain=CECT 5831", "accession": "GCA_014192015.1", "taxid": 297318, "species_taxid": 297318, "relation_to_type": "type", "validated": true, "ani": 79.0165, "matched_fragments": 598, "total_fragments": 2157, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus pini", "strain": "strain=JCM 16418", "accession": "GCA_001315125.1", "taxid": 669461, "species_taxid": 669461, "relation_to_type": "type", "validated": true, "ani": 78.5243, "matched_fragments": 348, "total_fragments": 2157, "ani_threshold": 95, "status": "below_threshold" }, { 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