{ "type": "genome", "identifier": "GCF_004919045.1", "organism": "Sinomonas albida", "title": "Sinomonas albida", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of life science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_004919045.1", "bioproject": "PRJNA224116", "biosample": "SAMN11370904", "wgs_master": "SWDW00000000.1", "refseq_category": "reference genome", "taxid": "369942", "species_taxid": "369942", "organism_name": "Sinomonas albida", "infraspecific_name": "strain=LC13", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/26", "asm_name": "ASM491904v1", "asm_submitter": "School of life science", "gbrs_paired_asm": "GCA_004919045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/919/045/GCF_004919045.1_ASM491904v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3779885", "genome_size_ungapped": "3779865", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_004919045.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3519", "protein_coding_gene_count": "3427", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-26", "dateModified": "2019-04-26", "datePublished": "2019-04-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Sinomonas albida" ], "sample_taxid": [ "369942" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "1.029 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3779885", "Number of Sequences": "36", "Longest Sequences (bp)": "427450", "N50 (bp)": "206486", "Gap Ratio (%)": "0.000529", "GCcontent (%)": "69.5", "Number of CDSs": "3515", "Average Protein Length": "321.2", "Coding Ratio (%)": "89.6", "Number of rRNAs": "4", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sinomonas albida", "strain": "strain=LC13", "accession": "GCA_004919045.1", "taxid": 369942, "species_taxid": 369942, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1240, "total_fragments": 1241, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sinomonas susongensis", "strain": "strain=A31", "accession": "GCA_005877005.1", "taxid": 1324851, "species_taxid": 1324851, "relation_to_type": "type", "validated": true, "ani": 82.2834, "matched_fragments": 763, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinomonas humi", "strain": "strain=MUSC 117", "accession": "GCA_000802235.1", "taxid": 1338436, "species_taxid": 1338436, "relation_to_type": "type", "validated": true, "ani": 81.8845, "matched_fragments": 748, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinomonas atrocyanea", "strain": "strain=CGMCC 1.1891", "accession": "GCA_014644475.1", "taxid": 37927, "species_taxid": 37927, "relation_to_type": "type", "validated": true, "ani": 81.5221, "matched_fragments": 708, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinomonas atrocyanea", "strain": "strain=KCTC 3377", "accession": "GCA_001577305.1", "taxid": 37927, "species_taxid": 37927, "relation_to_type": "type", "validated": true, "ani": 81.4888, "matched_fragments": 750, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinomonas atrocyanea", "strain": "strain=NBRC 12956", "accession": "GCA_006539205.1", "taxid": 37927, "species_taxid": 37927, "relation_to_type": "type", "validated": true, "ani": 81.485, "matched_fragments": 728, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinomonas mesophila", "strain": "strain=MPKL 26", "accession": "GCA_001999765.1", "taxid": 1531955, "species_taxid": 1531955, "relation_to_type": "type", "validated": true, "ani": 81.4787, "matched_fragments": 697, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinomonas notoginsengisoli", "strain": "strain=KCTC 29237", "accession": "GCA_021554725.1", 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"num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000802235.1", "gtdb_species": "s__Sinomonas humi", "ani": 81.8744, "matched_fragments": 749, "total_fragments": 1241, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Sinomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001999765.1", "gtdb_species": "s__Sinomonas mesophila", "ani": 81.5284, "matched_fragments": 692, "total_fragments": 1241, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Sinomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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sp014656475", "ani": 80.7311, "matched_fragments": 666, "total_fragments": 1241, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Sinomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.155, "cell_length": 0.491, "doubling_h": null, "growth_tmp": 28.125, "optimum_tmp": 30.0, "optimum_ph": 7.0, "genome_size": 4477380.5, "gc_content": 70.24, "coding_genes": 4025.5, "rRNA16S_genes": 4.0, "tRNA_genes": 56.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Sinomonas", "albida" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }