{ "type": "genome", "identifier": "GCF_005047595.1", "organism": "Pontimicrobium aquaticum", "title": "Pontimicrobium aquaticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005047595.1", "bioproject": "PRJNA224116", "biosample": "SAMN11356677", "wgs_master": "SUPL00000000.1", "refseq_category": "reference genome", "taxid": "2565367", "species_taxid": "2565367", "organism_name": "Pontimicrobium aquaticum", "infraspecific_name": "strain=CAU 1491", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/01", "asm_name": "ASM504759v1", "asm_submitter": "Chung-Ang University", "gbrs_paired_asm": "GCA_005047595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/047/595/GCF_005047595.1_ASM504759v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3313614", "genome_size_ungapped": "3313518", "gc_percent": "32.500000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005047595.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3082", "protein_coding_gene_count": "3020", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-01", "dateModified": "2019-05-01", "datePublished": "2019-05-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Pontimicrobium aquaticum" ], "sample_taxid": [ "2565367" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju island" ], "sample_host_location_id": [], "data_size": "0.920 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3313614", "Number of Sequences": "22", "Longest Sequences (bp)": "649653", "N50 (bp)": "443131", "Gap Ratio (%)": "0.002897", "GCcontent (%)": "32.4", "Number of CDSs": "3053", "Average Protein Length": "329.0", "Coding Ratio (%)": "90.9", "Number of rRNAs": "3", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1092, "total_fragments": 1092, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Hanstruepera ponticola", "strain": "strain=MM-14", "accession": "GCA_012931685.1", "taxid": 2042995, "species_taxid": 2042995, "relation_to_type": "type", "validated": true, "ani": 78.156, "matched_fragments": 229, "total_fragments": 1092, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter aestuarii", "strain": "strain=KCTC 23449", "accession": "GCA_006148925.1", "taxid": 912802, "species_taxid": 912802, "relation_to_type": "type", "validated": true, "ani": 78.0447, "matched_fragments": 206, "total_fragments": 1092, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 77.7811, "matched_fragments": 240, "total_fragments": 1092, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola maritimus", "strain": "strain=1505", "accession": "GCA_008056315.1", "taxid": 2591822, "species_taxid": 2591822, "relation_to_type": "type", "validated": true, "ani": 77.7538, "matched_fragments": 249, "total_fragments": 1092, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanihabitans sediminis", "strain": "strain=DSM 28133", "accession": "GCA_003315315.1", "taxid": 1812012, "species_taxid": 1812012, "relation_to_type": "type", "validated": true, "ani": 77.7391, "matched_fragments": 212, "total_fragments": 1092, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olleya aquimaris", "strain": "strain=DSM 24464", "accession": "GCA_003259525.1", "taxid": 639310, "species_taxid": 639310, "relation_to_type": "type", "validated": true, "ani": 77.7123, "matched_fragments": 259, "total_fragments": 1092, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanihabitans sediminis", "strain": "strain=S9-10", "accession": "GCA_003337215.1", "taxid": 1812012, "species_taxid": 1812012, "relation_to_type": "type", "validated": true, "ani": 77.6725, "matched_fragments": 218, "total_fragments": 1092, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana agarivorans", "strain": "strain=JW-26", "accession": "GCA_001642835.1", "taxid": 481183, "species_taxid": 481183, "relation_to_type": "type", "validated": true, "ani": 77.5936, "matched_fragments": 193, "total_fragments": 1092, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 77.5749, "matched_fragments": 219, "total_fragments": 1092, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga rizhaonensis", "strain": "strain=RZ03", "accession": "GCA_004791695.1", "taxid": 2559571, 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true, "ani": 77.5112, "matched_fragments": 167, "total_fragments": 1092, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mariniflexile gromovii", "strain": "strain=KCTC 12570", "accession": "GCA_017814435.1", "taxid": 362523, "species_taxid": 362523, "relation_to_type": "type", "validated": true, "ani": 77.4781, "matched_fragments": 221, "total_fragments": 1092, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter marinivivus", "strain": "strain=ZY111", "accession": "GCA_003143755.1", "taxid": 2100723, "species_taxid": 2100723, "relation_to_type": "type", "validated": true, "ani": 77.4696, "matched_fragments": 284, "total_fragments": 1092, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter alginicilyticus", "strain": "strain=HZ22", "accession": "GCA_001310225.1", "taxid": 1736674, "species_taxid": 1736674, "relation_to_type": "type", "validated": true, "ani": 77.4644, "matched_fragments": 217, "total_fragments": 1092, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 77.4616, "matched_fragments": 176, "total_fragments": 1092, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella helgolandensis", "strain": "strain=Z963", "accession": "GCA_013404085.1", "taxid": 2697010, "species_taxid": 2697010, "relation_to_type": "type", "validated": true, "ani": 77.4035, "matched_fragments": 229, "total_fragments": 1092, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 2799948, "relation_to_type": "type", "validated": true, "ani": 77.3866, "matched_fragments": 189, "total_fragments": 1092, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana carrageenivorans", "strain": "strain=UJ94", "accession": "GCA_002893765.1", "taxid": 2069432, "species_taxid": 2069432, "relation_to_type": "type", "validated": true, "ani": 77.2916, "matched_fragments": 184, "total_fragments": 1092, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olleya marilimosa", "strain": "strain=CAM030", "accession": "GCA_000518485.1", "taxid": 272164, "species_taxid": 272164, "relation_to_type": "type", "validated": true, "ani": 77.2833, "matched_fragments": 264, "total_fragments": 1092, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola marinus", "strain": "strain=B011", "accession": "GCA_008085455.1", "taxid": 1912246, "species_taxid": 1912246, "relation_to_type": "type", "validated": true, "ani": 77.235, "matched_fragments": 208, "total_fragments": 1092, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_005047595.1", "gtdb_species": "s__CAU-1491 sp005047595", "ani": 100.0, "matched_fragments": 1092, "total_fragments": 1092, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__CAU-1491", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_011777505.1", "gtdb_species": "s__CAU-1491 sp011777505", "ani": 83.2676, "matched_fragments": 758, "total_fragments": 1092, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__CAU-1491", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, 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