{ "type": "genome", "identifier": "GCF_005048855.1", "organism": "Sphingobacterium olei", "title": "Sphingobacterium olei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nanjing Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005048855.1", "bioproject": "PRJNA224116", "biosample": "SAMN11472237", "wgs_master": "SUME00000000.1", "refseq_category": "reference genome", "taxid": "2571155", "species_taxid": "2571155", "organism_name": "Sphingobacterium olei", "infraspecific_name": "strain=HAL-9", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/02", "asm_name": "ASM504885v1", "asm_submitter": "Nanjing Agricultural University", "gbrs_paired_asm": "GCA_005048855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/048/855/GCF_005048855.1_ASM504885v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5406411", "genome_size_ungapped": "5406401", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "27", "contig_count": "27", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005048855.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4525", "protein_coding_gene_count": "4451", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-02", "dateModified": "2019-05-02", "datePublished": "2019-05-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingobacterium olei" ], "sample_taxid": [ "2571155" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium griseoflavum", "strain": "strain=CGMCC 1.12966", "accession": "GCA_014653155.1", "taxid": 1474952, "species_taxid": 1474952, "relation_to_type": "type", "validated": true, "ani": 78.0243, "matched_fragments": 123, "total_fragments": 1787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium wenxiniae", "strain": "strain=DSM 22789", "accession": "GCA_900116225.1", "taxid": 683125, "species_taxid": 683125, "relation_to_type": "type", "validated": true, "ani": 77.9045, "matched_fragments": 164, "total_fragments": 1787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium rhinopitheci", "strain": "strain=WQ 047", "accession": "GCA_022627575.1", "taxid": 2781960, "species_taxid": 2781960, "relation_to_type": "type", "validated": true, "ani": 77.8714, "matched_fragments": 184, "total_fragments": 1787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobacterium prati", "strain": "strain=arapr2", "accession": "GCA_013167215.1", "taxid": 2737006, "species_taxid": 2737006, "relation_to_type": "type", "validated": true, "ani": 77.821, "matched_fragments": 144, "total_fragments": 1787, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter aquae", "strain": "strain=CJ43", "accession": "GCA_008195825.1", "taxid": 2605747, "species_taxid": 2605747, "relation_to_type": "type", "validated": true, "ani": 76.793, "matched_fragments": 53, "total_fragments": 1787, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_005048855.1", "gtdb_species": "s__Sphingobacterium olei", "ani": 100.0, "matched_fragments": 1787, "total_fragments": 1787, "gtdb_taxonomy": 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