{
    "type": "genome",
    "identifier": "GCF_005049285.1",
    "organism": "Halorientalis salina",
    "title": "Halorientalis salina",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Jiangsu University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_005049285.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11155637",
        "wgs_master": "SOSC00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2932266",
        "species_taxid": "2932266",
        "organism_name": "Halorientalis salina",
        "infraspecific_name": "strain=NEN8",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/30",
        "asm_name": "ASM504928v1",
        "asm_submitter": "Jiangsu University",
        "gbrs_paired_asm": "GCA_005049285.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/049/285/GCF_005049285.1_ASM504928v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "3661127",
        "genome_size_ungapped": "3661127",
        "gc_percent": "64.000000",
        "replicon_count": "0",
        "scaffold_count": "23",
        "contig_count": "23",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_005049285.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "3760",
        "protein_coding_gene_count": "3646",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-30",
    "dateModified": "2019-04-30",
    "datePublished": "2019-04-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halorientalis salina"
        ],
        "sample_taxid": [
            "2932266"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Tibet"
        ],
        "sample_host_location_id": [],
        "data_size": "1.011 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3661127",
        "Number of Sequences": "23",
        "Longest Sequences (bp)": "848896",
        "N50 (bp)": "291148",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.2",
        "Number of CDSs": "3680",
        "Average Protein Length": "288.7",
        "Coding Ratio (%)": "87.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Halorientalis salina",
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                "relation_to_type": "type",
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                "status": "conclusive"
            },
            {
                "organism_name": "Halorientalis salina",
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            {
                "organism_name": "Halorientalis brevis",
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                "status": "below_threshold"
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            {
                "organism_name": "Halorientalis marina",
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                "accession": "GCA_023028345.1",
                "taxid": 2931976,
                "species_taxid": 2931976,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Halorientalis regularis",
                "strain": "strain=TNN28",
                "accession": "GCA_023698535.1",
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                "species_taxid": 660518,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorientalis pallida",
                "strain": "strain=F13-25",
                "accession": "GCA_004118325.1",
                "taxid": 2479928,
                "species_taxid": 2479928,
                "relation_to_type": "type",
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                "ani": 80.9205,
                "matched_fragments": 670,
                "total_fragments": 1210,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halosimplex halophilum",
                "strain": "strain=TH32",
                "accession": "GCA_004698125.1",
                "taxid": 2559572,
                "species_taxid": 2559572,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7962,
                "matched_fragments": 507,
                "total_fragments": 1210,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halapricum salinum",
                "strain": "strain=CBA1105",
                "accession": "GCA_000755225.1",
                "taxid": 1457250,
                "species_taxid": 1457250,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 375,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCA_005049285.1",
                "gtdb_species": "s__Halorientalis sp005049285",
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                "matched_fragments": 1210,
                "total_fragments": 1210,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halorientalis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_001989615.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halorientalis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900110215.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halorientalis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_900102305.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_004799665.1",
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                "mean_intra_species_ani": "100.00",
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                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}