{
    "type": "genome",
    "identifier": "GCF_005083985.2",
    "organism": "Caminibacter pacificus",
    "title": "Caminibacter pacificus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Rutgers University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_005083985.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08634218",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1424653",
        "species_taxid": "1424653",
        "organism_name": "Caminibacter pacificus",
        "infraspecific_name": "strain=TB6",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/06/20",
        "asm_name": "ASM508398v2",
        "asm_submitter": "Rutgers University",
        "gbrs_paired_asm": "GCA_005083985.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/083/985/GCF_005083985.2_ASM508398v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1871566",
        "genome_size_ungapped": "1871566",
        "gc_percent": "34.000000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_005083985.2-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "2038",
        "protein_coding_gene_count": "1968",
        "non_coding_gene_count": "63",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-06-20",
    "dateModified": "2019-06-20",
    "datePublished": "2019-06-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Caminibacter pacificus"
        ],
        "sample_taxid": [
            "1424653"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean: East Pacific Rise"
        ],
        "sample_host_location_id": [],
        "data_size": "0.515 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1871566",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "1779337",
        "N50 (bp)": "1779337",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "34.1",
        "Number of CDSs": "1979",
        "Average Protein Length": "296.0",
        "Coding Ratio (%)": "93.9",
        "Number of rRNAs": "8",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Caminibacter pacificus",
                "strain": "strain=TB6",
                "accession": "GCA_005083985.2",
                "taxid": 1424653,
                "species_taxid": 1424653,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 622,
                "total_fragments": 623,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Caminibacter pacificus",
                "strain": "strain=DSM 27783",
                "accession": "GCA_003752135.1",
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                "species_taxid": 1424653,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9654,
                "matched_fragments": 613,
                "total_fragments": 623,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Caminibacter mediatlanticus",
                "strain": "strain=TB-2",
                "accession": "GCA_000170735.1",
                "taxid": 291048,
                "species_taxid": 291048,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5913,
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                "total_fragments": 623,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caminibacter mediatlanticus",
                "strain": "strain=TB-2",
                "accession": "GCA_005843985.1",
                "taxid": 291048,
                "species_taxid": 291048,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3716,
                "matched_fragments": 218,
                "total_fragments": 623,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lebetimonas natsushimae",
                "strain": "strain=HS1857",
                "accession": "GCA_002335445.1",
                "taxid": 1936991,
                "species_taxid": 1936991,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7344,
                "matched_fragments": 188,
                "total_fragments": 623,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003752135.1",
                "gtdb_species": "s__Cetia pacifica",
                "ani": 99.9654,
                "matched_fragments": 613,
                "total_fragments": 623,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Nautiliales;f__Nautiliaceae;g__Cetia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.26",
                "min_intra_species_ani": "98.54",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000021725.1",
                "gtdb_species": "s__Nautilia profundicola",
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                "matched_fragments": 255,
                "total_fragments": 623,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Nautiliales;f__Nautiliaceae;g__Nautilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004006315.1",
                "gtdb_species": "s__Nautilia profundicola_A",
                "ani": 78.824,
                "matched_fragments": 242,
                "total_fragments": 623,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Nautiliales;f__Nautiliaceae;g__Nautilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005843985.1",
                "gtdb_species": "s__Caminibacter mediatlanticus",
                "ani": 78.3286,
                "matched_fragments": 218,
                "total_fragments": 623,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Nautiliales;f__Nautiliaceae;g__Caminibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.80",
                "min_intra_species_ani": "98.80",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002335445.1",
                "gtdb_species": "s__Lebetimonas natsushimae",
                "ani": 77.7533,
                "matched_fragments": 190,
                "total_fragments": 623,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Nautiliales;f__Nautiliaceae;g__Lebetimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.213,
        "cell_length": 0.127,
        "doubling_h": -0.03,
        "growth_tmp": 56.666,
        "optimum_tmp": 55.0,
        "optimum_ph": 6.25,
        "genome_size": 1663618.0,
        "gc_content": 27.1,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Caminibacter",
        "pacificus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}