{ "type": "genome", "identifier": "GCF_005144965.1", "organism": "Hankyongella ginsenosidimutans", "title": "Hankyongella ginsenosidimutans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hankyong National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005144965.1", "bioproject": "PRJNA224116", "biosample": "SAMN11393911", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1763828", "species_taxid": "1763828", "organism_name": "Hankyongella ginsenosidimutans", "infraspecific_name": "strain=W1-2-3", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/05", "asm_name": "ASM514496v1", "asm_submitter": "Hankyong National University", "gbrs_paired_asm": "GCA_005144965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/144/965/GCF_005144965.1_ASM514496v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2880809", "genome_size_ungapped": "2880809", "gc_percent": "65.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005144965.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3771", "protein_coding_gene_count": "2881", "non_coding_gene_count": "51", "pubmed_id": "31980980" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-05", "dateModified": "2019-05-05", "datePublished": "2019-05-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Hankyongella ginsenosidimutans" ], "sample_taxid": [ "1763828" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.793 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.12, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2880809", "Number of Sequences": "1", "Longest Sequences (bp)": "2880809", "N50 (bp)": "2880809", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.0", "Number of CDSs": "3980", "Average Protein Length": "197.1", "Coding Ratio (%)": "81.7", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hankyongella ginsenosidimutans", "strain": "strain=W1-2-3", "accession": "GCA_005144965.1", "taxid": 1763828, "species_taxid": 1763828, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 958, 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"below_threshold" }, { "organism_name": "Sphingomonas chungangi", "strain": "strain=CGMCC 1.13654", "accession": "GCA_013778325.1", "taxid": 2683589, "species_taxid": 2683589, "relation_to_type": "type", "validated": true, "ani": 77.3861, "matched_fragments": 192, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas jaspsi", "strain": "strain=DSM 18422", "accession": "GCA_000585415.1", "taxid": 392409, "species_taxid": 392409, "relation_to_type": "type", "validated": true, "ani": 77.3676, "matched_fragments": 146, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas sanxanigenens", "strain": "strain=NX02", "accession": "GCA_000512205.2", "taxid": 397260, "species_taxid": 397260, "relation_to_type": "type", "validated": true, "ani": 77.2823, "matched_fragments": 231, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas ginkgonis", "strain": "strain=HMF7854", "accession": "GCA_003970925.1", "taxid": 2315330, "species_taxid": 2315330, "relation_to_type": "type", "validated": true, "ani": 77.2444, "matched_fragments": 152, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas profundi", "strain": "strain=LMO-1", "accession": "GCA_009739515.1", "taxid": 2681549, "species_taxid": 2681549, "relation_to_type": "type", "validated": true, "ani": 77.2138, "matched_fragments": 235, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polymorphobacter glacialis", "strain": "strain=CGMCC 1.15519", "accession": "GCA_014643455.1", "taxid": 1614636, "species_taxid": 1614636, "relation_to_type": "type", "validated": true, "ani": 77.1995, "matched_fragments": 131, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas naasensis", "strain": "strain=DSM 100060", "accession": "GCA_011762145.1", "taxid": 1344951, "species_taxid": 1344951, "relation_to_type": "type", "validated": true, "ani": 77.1553, "matched_fragments": 184, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas spermidinifaciens", "strain": "strain=9NM-10", "accession": "GCA_002351485.1", "taxid": 1141889, "species_taxid": 1141889, "relation_to_type": "type", "validated": true, "ani": 77.1282, "matched_fragments": 170, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aquimaris", "strain": "strain=JCM 12189", "accession": "GCA_009827445.1", "taxid": 255984, "species_taxid": 255984, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1258, "matched_fragments": 83, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas adhaesiva", "strain": "strain=NBRC 15099", "accession": "GCA_001592345.1", 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"type", "validated": true, "ani": 77.0608, "matched_fragments": 192, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter rudongensis", "strain": "strain=CGMCC 1.1761", "accession": "GCA_900100155.1", "taxid": 177413, "species_taxid": 177413, "relation_to_type": "type", "validated": true, "ani": 77.0124, "matched_fragments": 135, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Starkeya novella", "strain": "strain=DSM 506", "accession": "GCA_000092925.1", "taxid": 921, "species_taxid": 921, "relation_to_type": "type", "validated": true, "ani": 76.9127, "matched_fragments": 165, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris tepida", "strain": "strain=GI", "accession": "GCA_003966715.1", "taxid": 2233851, "species_taxid": 2233851, "relation_to_type": "type", "validated": true, "ani": 76.8189, "matched_fragments": 156, 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"below_threshold" }, { "organism_name": "Nisaea acidiphila", "strain": "strain=MEBiC11861", "accession": "GCA_024662015.1", "taxid": 1862145, "species_taxid": 1862145, "relation_to_type": "type", "validated": true, "ani": 76.5541, "matched_fragments": 106, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum oleiclasticum", "strain": "strain=RWY-5-1-1", "accession": "GCA_013423485.1", "taxid": 2735135, "species_taxid": 2735135, "relation_to_type": "type", "validated": true, "ani": 76.4276, "matched_fragments": 197, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.12, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_005144965.1", "gtdb_species": "s__Hankyongella ginsenosidimutans", "ani": 100.0, "matched_fragments": 959, "total_fragments": 960, "gtdb_taxonomy": 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