{ "type": "genome", "identifier": "GCF_005217585.1", "organism": "Lysinibacillus tabacifolii", "title": "Lysinibacillus tabacifolii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "NCAUR-ARS-USDA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005217585.1", "bioproject": "PRJNA224116", "biosample": "SAMN11535467", "wgs_master": "SZPT00000000.1", "refseq_category": "reference genome", "taxid": "1173107", "species_taxid": "1173107", "organism_name": "Lysinibacillus tabacifolii", "infraspecific_name": "strain=KCTC 33042", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/06", "asm_name": "ASM521758v1", "asm_submitter": "NCAUR-ARS-USDA", "gbrs_paired_asm": "GCA_005217585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/217/585/GCF_005217585.1_ASM521758v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4505022", "genome_size_ungapped": "4505022", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005217585.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "4422", "protein_coding_gene_count": "4275", "non_coding_gene_count": "101", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-06", "dateModified": "2019-05-06", "datePublished": "2019-05-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Lysinibacillus tabacifolii" ], "sample_taxid": [ "1173107" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Yunnan 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"status": "inconclusive" }, { "organism_name": "Lysinibacillus sphaericus", "strain": "strain=NRRL B-23268", "accession": "GCA_005217555.1", "taxid": 1421, "species_taxid": 1421, "relation_to_type": "suspected-type", "validated": true, "ani": 99.0449, "matched_fragments": 1363, "total_fragments": 1494, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Lysinibacillus varians", "strain": "strain=NBRC 109424", "accession": "GCA_005217815.1", "taxid": 1145276, "species_taxid": 1145276, "relation_to_type": "suspected-type", "validated": true, "ani": 98.9731, "matched_fragments": 1363, "total_fragments": 1494, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Lysinibacillus varians", "strain": "strain=GY32", "accession": "GCA_000600105.1", "taxid": 1145276, "species_taxid": 1145276, "relation_to_type": "suspected-type", "validated": true, "ani": 98.943, "matched_fragments": 1391, "total_fragments": 1494, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Lysinibacillus cavernae", "strain": "strain=SYSU K30005", "accession": "GCA_009724685.1", "taxid": 2666135, "species_taxid": 2666135, "relation_to_type": "type", "validated": true, "ani": 81.6935, "matched_fragments": 745, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysinibacillus contaminans", "strain": "strain=DSM 25560", "accession": "GCA_001278945.1", "taxid": 1293441, "species_taxid": 1293441, "relation_to_type": "type", "validated": true, "ani": 80.5194, "matched_fragments": 585, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenisporosarcina cavernae", "strain": "strain=K2R23-3", "accession": "GCA_003595195.1", "taxid": 2320858, "species_taxid": 2320858, "relation_to_type": "type", "validated": true, "ani": 77.4087, "matched_fragments": 89, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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"filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Lysinibacillus", "tabacifolii" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }