{ "type": "genome", "identifier": "GCF_005222685.1", "organism": "Segeticoccus rhizosphaerae", "title": "Segeticoccus rhizosphaerae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nanjing Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005222685.1", "bioproject": "PRJNA224116", "biosample": "SAMN11523270", "wgs_master": "SWMA00000000.1", "refseq_category": "reference genome", "taxid": "1104777", "species_taxid": "1104777", "organism_name": "Segeticoccus rhizosphaerae", "infraspecific_name": "strain=XNB-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/07", "asm_name": "ASM522268v1", "asm_submitter": "Nanjing Agricultural University", "gbrs_paired_asm": "GCA_005222685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/222/685/GCF_005222685.1_ASM522268v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from synonym type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4556803", "genome_size_ungapped": "4556803", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "107", "contig_count": "107", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005222685.1-RS_2024_09_08", "annotation_date": "2024-09-08", "total_gene_count": "4352", "protein_coding_gene_count": "4231", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-07", "dateModified": "2019-05-07", "datePublished": "2019-05-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Segeticoccus rhizosphaerae" ], "sample_taxid": [ "1104777" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.237 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4556803", "Number of Sequences": "107", "Longest Sequences (bp)": "327085", "N50 (bp)": "97085", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.1", "Number of CDSs": "4270", "Average Protein Length": "320.4", "Coding Ratio (%)": "90.1", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pedococcus cremeus", "strain": "strain=CGMCC 1.6963", "accession": "GCA_900111375.1", "taxid": 587636, "species_taxid": 587636, "relation_to_type": "type", "validated": true, "ani": 79.1965, "matched_fragments": 535, 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"status": "below_threshold" }, { "organism_name": "Barrientosiimonas humi", "strain": "strain=DSM 24617", "accession": "GCA_006716095.1", "taxid": 999931, "species_taxid": 999931, "relation_to_type": "type", "validated": true, "ani": 78.9902, "matched_fragments": 473, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteipulveratus halotolerans", "strain": "strain=C296001", "accession": "GCA_001247745.1", "taxid": 1631356, "species_taxid": 1631356, "relation_to_type": "type", "validated": true, "ani": 78.7586, "matched_fragments": 462, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus duodecadis", "strain": "strain=DSM 12806", "accession": "GCA_002846495.1", "taxid": 173053, "species_taxid": 173053, "relation_to_type": "type", "validated": true, "ani": 78.7515, "matched_fragments": 437, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Knoellia aerolata", "strain": "strain=DSM 18566", "accession": "GCA_000768695.1", "taxid": 442954, "species_taxid": 442954, "relation_to_type": "type", "validated": true, "ani": 78.7112, "matched_fragments": 405, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Knoellia flava", "strain": "strain=TL1", "accession": "GCA_000768675.1", "taxid": 913969, "species_taxid": 913969, "relation_to_type": "type", "validated": true, "ani": 78.6444, "matched_fragments": 400, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flexivirga aerilata", "strain": "strain=ID2601S", "accession": "GCA_013002715.1", "taxid": 1656889, "species_taxid": 1656889, "relation_to_type": "type", "validated": true, "ani": 78.5839, "matched_fragments": 444, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus piscis", "strain": "strain=DSM 22760", "accession": "GCA_022568835.1", "taxid": 673954, "species_taxid": 673954, "relation_to_type": "type", "validated": true, "ani": 78.5522, "matched_fragments": 387, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus endophyticus", "strain": "strain=CGMCC 4.7300", "accession": "GCA_014646175.1", "taxid": 1690220, "species_taxid": 1690220, "relation_to_type": "type", "validated": true, "ani": 78.5292, "matched_fragments": 397, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter endophyticus", "strain": "strain=YIM B02568", "accession": "GCA_016888335.1", "taxid": 2806261, "species_taxid": 2806261, "relation_to_type": "type", "validated": true, "ani": 78.4811, "matched_fragments": 353, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus endophyticus", "strain": "strain=IP6SC6", "accession": "GCA_011326735.1", "taxid": 1690220, "species_taxid": 1690220, "relation_to_type": "type", "validated": true, "ani": 78.4698, "matched_fragments": 391, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus cauae", "strain": "strain=MKL-02", "accession": "GCA_009707125.1", "taxid": 2663847, "species_taxid": 2663847, "relation_to_type": "type", "validated": true, "ani": 78.4624, "matched_fragments": 394, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteipulveratus mongoliensis", "strain": "strain=MN07-A0370", "accession": "GCA_001190945.1", "taxid": 571913, "species_taxid": 571913, "relation_to_type": "type", "validated": true, "ani": 78.4351, "matched_fragments": 433, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium sediminis", "strain": "strain=EGI L100131", "accession": "GCA_021272345.1", "taxid": 2904603, "species_taxid": 2904603, "relation_to_type": "type", "validated": true, "ani": 78.4148, "matched_fragments": 380, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus bolidensis", "strain": "strain=DSM 15745", "accession": "GCA_000426385.1", "taxid": 229480, "species_taxid": 229480, "relation_to_type": "type", "validated": true, "ani": 78.4039, "matched_fragments": 425, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Knoellia remsis", "strain": "strain=ATCC BAA-1496", "accession": "GCA_003002895.1", "taxid": 407159, "species_taxid": 407159, "relation_to_type": "type", "validated": true, "ani": 78.3856, "matched_fragments": 427, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus jejuensis", "strain": "strain=NRRL B-24460", "accession": "GCA_000720925.1", "taxid": 367299, "species_taxid": 367299, "relation_to_type": "type", "validated": true, "ani": 78.3812, "matched_fragments": 453, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serinicoccus chungangensis", "strain": "strain=CCUG 59777", "accession": "GCA_006337125.1", "taxid": 767452, "species_taxid": 767452, "relation_to_type": "type", "validated": true, "ani": 78.2717, "matched_fragments": 372, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter melonis", "strain": "strain=NBRC107855", "accession": "GCA_020567375.1", "taxid": 262209, "species_taxid": 262209, "relation_to_type": "type", "validated": true, "ani": 78.0933, "matched_fragments": 390, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leekyejoonella antrihumi", "strain": "strain=C5-26", "accession": "GCA_007845645.1", "taxid": 1660198, "species_taxid": 1660198, "relation_to_type": "type", "validated": true, "ani": 78.077, "matched_fragments": 399, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium murale", "strain": "strain=DSM 22056", "accession": "GCA_003352835.1", "taxid": 1050153, "species_taxid": 1050153, "relation_to_type": "type", "validated": true, "ani": 77.9177, "matched_fragments": 270, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 76.9497, "matched_fragments": 313, "total_fragments": 1469, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009192725.1", "gtdb_species": "s__Segeticoccus rhizosphaerae", "ani": 98.8183, "matched_fragments": 1021, "total_fragments": 1469, "gtdb_taxonomy": 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