{ "type": "genome", "identifier": "GCF_005233875.1", "organism": "Kribbella jiaozuonensis", "title": "Kribbella jiaozuonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of life science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005233875.1", "bioproject": "PRJNA224116", "biosample": "SAMN11521819", "wgs_master": "SZPZ00000000.1", "refseq_category": "reference genome", "taxid": "2575441", "species_taxid": "2575441", "organism_name": "Kribbella jiaozuonensis", "infraspecific_name": "strain=NEAU-THZ27", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/07", "asm_name": "ASM523387v1", "asm_submitter": "School of life science", "gbrs_paired_asm": "GCA_005233875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/233/875/GCF_005233875.1_ASM523387v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8659701", "genome_size_ungapped": "8659681", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005233875.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "8465", "protein_coding_gene_count": "8350", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-07", "dateModified": "2019-05-07", "datePublished": "2019-05-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Kribbella jiaozuonensis" ], "sample_taxid": [ "2575441" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Jiaozuo" ], "sample_host_location_id": [], "data_size": "2.348 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8659701", "Number of Sequences": "12", "Longest Sequences (bp)": "2422912", "N50 (bp)": "1308315", "Gap Ratio (%)": "0.000231", "GCcontent (%)": "68.0", "Number of CDSs": "8488", "Average Protein Length": "317.0", "Coding Ratio (%)": "93.2", "Number of rRNAs": "4", "Number of tRNAs": "70", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kribbella jiaozuonensis", "strain": "strain=NEAU-THZ27", "accession": "GCA_005233875.1", "taxid": 2575441, "species_taxid": 2575441, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2830, "total_fragments": 2881, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kribbella soli", "strain": "strain=KCTC 29219", "accession": "GCA_004331345.1", "taxid": 1124743, "species_taxid": 1124743, "relation_to_type": "type", "validated": true, "ani": 87.183, "matched_fragments": 2133, "total_fragments": 2881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella speibonae", "strain": "strain=YM55", "accession": "GCA_004331375.1", "taxid": 1572660, "species_taxid": 1572660, "relation_to_type": "type", "validated": true, "ani": 87.075, "matched_fragments": 2117, "total_fragments": 2881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella sindirgiensis", "strain": "strain=DSM 27082", "accession": "GCA_004331435.1", "taxid": 1124744, "species_taxid": 1124744, "relation_to_type": "type", "validated": true, "ani": 86.9507, "matched_fragments": 2079, "total_fragments": 2881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella shirazensis", "strain": "strain=DSM 45490", "accession": "GCA_011761605.1", "taxid": 1105143, "species_taxid": 1105143, "relation_to_type": "type", "validated": true, "ani": 86.549, "matched_fragments": 1972, "total_fragments": 2881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella aluminosa", "strain": "strain=DSM 18824", "accession": "GCA_017876295.1", "taxid": 416017, "species_taxid": 416017, "relation_to_type": "type", "validated": true, "ani": 86.3582, "matched_fragments": 1973, "total_fragments": 2881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella jejuensis", "strain": "strain=DSM 17305", "accession": "GCA_006715085.1", "taxid": 236068, "species_taxid": 236068, "relation_to_type": "type", "validated": true, "ani": 86.1546, "matched_fragments": 1931, "total_fragments": 2881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella solani", "strain": "strain=DSM 17294", "accession": "GCA_014205295.1", "taxid": 236067, "species_taxid": 236067, "relation_to_type": "type", "validated": true, "ani": 85.3112, "matched_fragments": 1779, "total_fragments": 2881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella capetownensis", "strain": "strain=YM53", "accession": "GCA_004331485.1", "taxid": 1572659, "species_taxid": 1572659, "relation_to_type": "type", "validated": true, "ani": 84.7101, "matched_fragments": 1992, "total_fragments": 2881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella pittospori", "strain": "strain=NRRL B-24813", "accession": "GCA_004331465.1", "taxid": 722689, "species_taxid": 722689, "relation_to_type": "type", "validated": true, "ani": 84.5968, "matched_fragments": 2033, "total_fragments": 2881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella turkmenica", "strain": "strain=16K104", "accession": "GCA_004348725.1", "taxid": 2530375, "species_taxid": 2530375, "relation_to_type": "type", "validated": true, "ani": 84.322, "matched_fragments": 1581, "total_fragments": 2881, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 77.8877, "matched_fragments": 529, "total_fragments": 2881, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_005233875.1", "gtdb_species": "s__Kribbella sp005233875", "ani": 100.0, "matched_fragments": 2826, "total_fragments": 2881, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004217145.1", "gtdb_species": "s__Kribbella soli_A", "ani": 91.592, "matched_fragments": 2407, "total_fragments": 2881, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004365355.1", "gtdb_species": "s__Kribbella sp004365355", "ani": 90.9765, "matched_fragments": 2317, "total_fragments": 2881, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004365875.1", "gtdb_species": "s__Kribbella sp004365875", "ani": 88.4888, "matched_fragments": 2265, "total_fragments": 2881, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004331345.1", "gtdb_species": "s__Kribbella soli", "ani": 87.1669, "matched_fragments": 2137, "total_fragments": 2881, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004366075.1", "gtdb_species": "s__Kribbella sp004366075", "ani": 87.0267, "matched_fragments": 2060, "total_fragments": 2881, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.22", "min_intra_species_ani": "95.50", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_004331435.1", "gtdb_species": "s__Kribbella sindirgiensis", "ani": 86.9695, "matched_fragments": 2076, "total_fragments": 2881, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.59", "min_intra_species_ani": "95.53", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_011761605.1", "gtdb_species": "s__Kribbella shirazensis", "ani": 86.5377, "matched_fragments": 1974, "total_fragments": 2881, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017876295.1", "gtdb_species": "s__Kribbella aluminosa", "ani": 86.3641, "matched_fragments": 1972, "total_fragments": 2881, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014205295.1", "gtdb_species": "s__Kribbella solani", "ani": 85.3112, "matched_fragments": 1779, "total_fragments": 2881, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Kribbellaceae;g__Kribbella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.398, "cell_length": 0.397, "doubling_h": null, "growth_tmp": 28.295, "optimum_tmp": 29.25, "optimum_ph": 7.093, "genome_size": 8603649.2, "gc_content": 69.05, "coding_genes": 6915.0, "rRNA16S_genes": 2.0, "tRNA_genes": 51.0, "gram_stain": 1.0, "sporulation": 0.9, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.9, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.1, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Kribbella", "jiaozuonensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }