{ "type": "genome", "identifier": "GCF_005239135.1", "organism": "Natronomonas salsuginis", "title": "Natronomonas salsuginis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Sevilla, Spain", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005239135.1", "bioproject": "PRJNA224116", "biosample": "SAMN09371776", "wgs_master": "QKNX00000000.1", "refseq_category": "reference genome", "taxid": "2217661", "species_taxid": "2217661", "organism_name": "Natronomonas salsuginis", "infraspecific_name": "strain=F20-122", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/08", "asm_name": "ASM523913v1", "asm_submitter": "University of Sevilla, Spain", "gbrs_paired_asm": "GCA_005239135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/239/135/GCF_005239135.1_ASM523913v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "2904418", "genome_size_ungapped": "2904418", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005239135.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3046", "protein_coding_gene_count": "2897", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-08", "dateModified": "2019-05-08", "datePublished": "2019-05-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Natronomonas salsuginis" ], "sample_taxid": [ "2217661" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Isla Bacuta, Huelva" ], "sample_host_location_id": [], "data_size": "0.802 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2904418", "Number of Sequences": "12", "Longest Sequences (bp)": "881904", "N50 (bp)": "675769", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.2", "Number of CDSs": "2948", "Average Protein Length": "285.2", "Coding Ratio (%)": "86.8", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Natronomonas salsuginis", "strain": "strain=F20-122", "accession": "GCA_005239135.1", "taxid": 2217661, "species_taxid": 2217661, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronomonas halophila", "strain": "strain=C90", "accession": "GCA_013391085.1", "taxid": 2747817, "species_taxid": 2747817, "relation_to_type": "type", "validated": true, "ani": 78.7555, "matched_fragments": 379, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronomonas pharaonis", "strain": "strain=Gabara", "accession": "GCA_000026045.1", "taxid": 2257, "species_taxid": 2257, "relation_to_type": "type", "validated": true, "ani": 78.7013, "matched_fragments": 350, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomicroarcula rubra", "strain": "strain=F13", "accession": "GCA_019599465.1", "taxid": 2487747, "species_taxid": 2487747, "relation_to_type": "type", "validated": true, "ani": 77.8636, "matched_fragments": 289, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobaculum saliterrae", "strain": "strain=WSA2", "accession": "GCA_009831625.1", "taxid": 2073113, "species_taxid": 2073113, "relation_to_type": "type", "validated": true, "ani": 77.442, "matched_fragments": 307, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natrinema gari", "strain": "strain=JCM 14663", "accession": "GCA_000337175.1", "taxid": 419186, "species_taxid": 419186, "relation_to_type": "type", "validated": true, "ani": 77.1971, "matched_fragments": 243, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natrinema pallidum", "strain": "strain=DSM 3751", "accession": "GCA_000337615.1", "taxid": 69527, "species_taxid": 69527, "relation_to_type": "type", "validated": true, "ani": 77.1093, "matched_fragments": 267, "total_fragments": 962, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0 }, 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null, "spiral_cell_shape": null }, "_genome_taxon": [ "Natronomonas", "salsuginis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }