{ "type": "genome", "identifier": "GCF_005280195.1", "organism": "Streptomyces galbus", "title": "Streptomyces galbus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zoetis", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005280195.1", "bioproject": "PRJNA224116", "biosample": "SAMN11280916", "wgs_master": "SZPR00000000.1", "refseq_category": "reference genome", "taxid": "33898", "species_taxid": "33898", "organism_name": "Streptomyces galbus", "infraspecific_name": "strain=DSM 40089", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/10", "asm_name": "ASM528019v1", "asm_submitter": "Zoetis", "gbrs_paired_asm": "GCA_005280195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/280/195/GCF_005280195.1_ASM528019v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7836436", "genome_size_ungapped": "7834537", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "111", "contig_count": "111", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005280195.1-RS_2024_04_03", "annotation_date": "2024-04-03", "total_gene_count": "7113", "protein_coding_gene_count": "6851", "non_coding_gene_count": "76", "pubmed_id": "32228806" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-10", "dateModified": "2019-05-10", "datePublished": "2019-05-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces galbus" ], "sample_taxid": [ "33898" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "unknown" ], "sample_host_location_id": [], "data_size": "2.082 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7836436", "Number of Sequences": "111", "Longest Sequences (bp)": "739204", "N50 (bp)": "326353", "Gap Ratio (%)": "0.024233", "GCcontent (%)": "73.1", "Number of CDSs": "7062", "Average Protein Length": "322.8", "Coding Ratio (%)": "87.3", "Number of rRNAs": "4", "Number of tRNAs": "85", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces galbus", "strain": "strain=DSM 40089", "accession": "GCA_005280195.1", "taxid": 33898, "species_taxid": 33898, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2572, "total_fragments": 2574, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces galbus", "strain": "strain=JCM 4639", "accession": "GCA_014650535.1", "taxid": 33898, "species_taxid": 33898, "relation_to_type": "type", "validated": true, "ani": 99.996, "matched_fragments": 2545, "total_fragments": 2574, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces longwoodensis", "strain": "strain=DSM 41677", "accession": "GCA_001514125.1", "taxid": 68231, "species_taxid": 68231, "relation_to_type": "type", "validated": true, "ani": 94.8848, "matched_fragments": 2231, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseosporeus", "strain": "strain=JCM 4766", "accession": "GCA_014656055.1", "taxid": 1910, "species_taxid": 1910, "relation_to_type": "type", "validated": true, "ani": 85.9941, "matched_fragments": 1810, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces glaucescens", "strain": "strain=NRRL B-2706", "accession": "GCA_002154375.1", "taxid": 1907, "species_taxid": 1907, "relation_to_type": "type", "validated": true, "ani": 85.3993, "matched_fragments": 1439, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseicoloratus", "strain": "strain=TRM S81-3", "accession": "GCA_014534645.1", "taxid": 2752516, "species_taxid": 2752516, "relation_to_type": "type", "validated": true, "ani": 85.3483, "matched_fragments": 1674, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseostramineus", "strain": "strain=CECT 3273", "accession": "GCA_014203535.1", "taxid": 66898, "species_taxid": 66898, "relation_to_type": "suspected-type", "validated": true, "ani": 85.3148, "matched_fragments": 1694, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces panaciradicis", "strain": "strain=NBRC 109811", "accession": "GCA_023516615.1", "taxid": 1470261, "species_taxid": 1470261, "relation_to_type": "type", "validated": true, "ani": 85.292, "matched_fragments": 1730, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces harenosi", "strain": "strain=PRKS01-65", "accession": "GCA_011008945.1", "taxid": 2697029, "species_taxid": 2697029, "relation_to_type": "type", "validated": true, "ani": 85.1457, "matched_fragments": 1441, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces barringtoniae", "strain": "strain=JA03", "accession": "GCA_020819595.1", "taxid": 2892029, "species_taxid": 2892029, "relation_to_type": "type", "validated": true, "ani": 85.0957, "matched_fragments": 1670, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lavenduligriseus", "strain": "strain=NRRL ISP-5487", "accession": "GCA_000718625.1", "taxid": 67315, "species_taxid": 67315, "relation_to_type": "type", "validated": true, "ani": 85.0746, "matched_fragments": 1654, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces nigra", "strain": "strain=452", "accession": "GCA_003074055.1", "taxid": 1827580, "species_taxid": 1827580, "relation_to_type": "type", "validated": true, "ani": 85.0663, "matched_fragments": 1666, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces durhamensis", "strain": "strain=NRRL B-3309", "accession": "GCA_000725475.1", "taxid": 68194, "species_taxid": 68194, "relation_to_type": "type", "validated": true, "ani": 84.9874, "matched_fragments": 1689, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces gossypiisoli", "strain": "strain=TRM 44567", "accession": "GCA_013433285.1", "taxid": 2748864, "species_taxid": 2748864, "relation_to_type": "type", "validated": true, "ani": 84.9482, "matched_fragments": 1674, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces fodineus", "strain": "strain=TW1S1", "accession": "GCA_001735805.1", "taxid": 1904616, "species_taxid": 1904616, "relation_to_type": "type", "validated": true, "ani": 84.8602, "matched_fragments": 1685, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces shenzhenensis subsp. oryzicola", "strain": "strain=W18L9", "accession": "GCA_013870495.1", "taxid": 2749088, "species_taxid": 943815, "relation_to_type": "type", "validated": true, "ani": 84.673, "matched_fragments": 1287, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces shenzhenensis", "strain": "strain=DSM 42034", "accession": "GCA_021462265.1", "taxid": 943815, "species_taxid": 943815, "relation_to_type": "type", "validated": true, "ani": 84.4113, "matched_fragments": 1701, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_005280195.1", "gtdb_species": "s__Streptomyces galbus", "ani": 100.0, "matched_fragments": 2572, "total_fragments": 2574, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.26", "min_intra_species_ani": "98.53", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_001514125.1", "gtdb_species": "s__Streptomyces longwoodensis", "ani": 94.8926, "matched_fragments": 2230, "total_fragments": 2574, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.95", "min_intra_species_ani": "95.95", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014656055.1", "gtdb_species": "s__Streptomyces griseosporeus", "ani": 86.0431, "matched_fragments": 1802, "total_fragments": 2574, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.70", "min_intra_species_ani": "98.69", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014649375.1", "gtdb_species": "s__Streptomyces aurantiogriseus", "ani": 85.9399, "matched_fragments": 1780, "total_fragments": 2574, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002019855.1", "gtdb_species": "s__Streptomyces antibioticus_B", "ani": 85.8393, "matched_fragments": 1753, "total_fragments": 2574, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.20", "min_intra_species_ani": "96.76", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001514205.1", "gtdb_species": "s__Streptomyces griseoruber", "ani": 85.735, "matched_fragments": 1770, "total_fragments": 2574, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004363835.1", "gtdb_species": "s__Streptomyces sp004363835", "ani": 85.6176, "matched_fragments": 1800, "total_fragments": 2574, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011193355.1", "gtdb_species": "s__Streptomyces sp011193355", "ani": 85.5268, "matched_fragments": 1702, "total_fragments": 2574, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000761215.1", "gtdb_species": "s__Streptomyces glaucescens", "ani": 85.3728, "matched_fragments": 1716, "total_fragments": 2574, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014203535.1", "gtdb_species": "s__Streptomyces griseostramineus", "ani": 85.2842, "matched_fragments": 1698, "total_fragments": 2574, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.88", "min_intra_species_ani": "99.76", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_019219825.1", "gtdb_species": "s__Streptomyces sp019219825", "ani": 85.1917, "matched_fragments": 1614, "total_fragments": 2574, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008973465.1", "gtdb_species": "s__Streptomyces sp008973465", "ani": 85.1798, "matched_fragments": 1670, "total_fragments": 2574, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003143935.1", "gtdb_species": "s__Streptomyces sp003143935", "ani": 85.0845, "matched_fragments": 1798, "total_fragments": 2574, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003074055.1", "gtdb_species": "s__Streptomyces nigra", "ani": 85.0645, "matched_fragments": 1666, "total_fragments": 2574, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.21", "min_intra_species_ani": "97.15", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_006715395.1", "gtdb_species": "s__Streptomyces sp006715395", "ani": 85.0002, "matched_fragments": 1800, "total_fragments": 2574, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.35", "min_intra_species_ani": "95.35", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.79", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001735805.1", "gtdb_species": "s__Streptomyces fodineus", "ani": 84.8503, "matched_fragments": 1686, "total_fragments": 2574, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019049285.1", "gtdb_species": "s__Streptomyces sp019049285", "ani": 84.5969, "matched_fragments": 1669, "total_fragments": 2574, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009857135.1", "gtdb_species": "s__Streptomyces sp009857135", "ani": 83.9866, "matched_fragments": 1556, "total_fragments": 2574, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009862265.1", "gtdb_species": "s__Streptomyces sp009862265", "ani": 83.6828, "matched_fragments": 1409, "total_fragments": 2574, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 27.0, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 10053065.0, "gc_content": 71.543, "coding_genes": 7141.289, "rRNA16S_genes": 6.155, "tRNA_genes": 67.804, "gram_stain": 1.0, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.005, "aerobic_respiration": 0.994, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.208, "coccus_cell_shape": 0.032, "filament_cell_shape": 0.582, "coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "galbus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }