{ "type": "genome", "identifier": "GCF_005298075.1", "organism": "Nakamurella flava", "title": "Nakamurella flava", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Research Center for Medicine & Biology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005298075.1", "bioproject": "PRJNA224116", "biosample": "SAMN11577469", "wgs_master": "SZZH00000000.1", "refseq_category": "reference genome", "taxid": "2576308", "species_taxid": "2576308", "organism_name": "Nakamurella flava", "infraspecific_name": "strain=N5BH11", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/13", "asm_name": "ASM529807v1", "asm_submitter": "Research Center for Medicine & Biology", "gbrs_paired_asm": "GCA_005298075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/298/075/GCF_005298075.1_ASM529807v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4843278", "genome_size_ungapped": "4843278", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005298075.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4423", "protein_coding_gene_count": "4359", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-13", "dateModified": "2019-05-13", "datePublished": "2019-05-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Nakamurella flava" ], "sample_taxid": [ "2576308" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guizhou" ], "sample_host_location_id": [], "data_size": "1.290 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4843278", "Number of Sequences": "13", "Longest Sequences (bp)": "2456896", "N50 (bp)": "2456896", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.6", "Number of CDSs": "4462", "Average Protein Length": "328.1", "Coding Ratio (%)": "90.7", "Number of rRNAs": "4", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nakamurella flava", "strain": "strain=N5BH11", "accession": "GCA_005298075.1", "taxid": 2576308, "species_taxid": 2576308, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1605, "total_fragments": 1606, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nakamurella multipartita", "strain": "strain=DSM 44233", "accession": "GCA_000024365.1", "taxid": 53461, "species_taxid": 53461, "relation_to_type": "type", "validated": true, "ani": 79.833, "matched_fragments": 796, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nakamurella flavida", "strain": "strain=KCTC 19127", "accession": "GCA_016918095.1", "taxid": 363630, "species_taxid": 363630, "relation_to_type": "type", "validated": true, "ani": 79.2909, "matched_fragments": 631, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nakamurella leprariae", "strain": "strain=YIM 132084", "accession": "GCA_016918035.1", "taxid": 2803911, "species_taxid": 2803911, "relation_to_type": "type", "validated": true, "ani": 79.0601, "matched_fragments": 615, "total_fragments": 1606, "ani_threshold": 95, "status": "below_threshold" }, { 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"filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Nakamurella", "flava" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }