{
    "type": "genome",
    "identifier": "GCF_005341425.1",
    "organism": "Limosilactobacillus fermentum",
    "title": "Limosilactobacillus fermentum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Weill Cornell Medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_005341425.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09475314",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "1613",
        "species_taxid": "1613",
        "organism_name": "Limosilactobacillus fermentum",
        "infraspecific_name": "strain=B1 28",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Chromosome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/05/14",
        "asm_name": "ASM534142v1",
        "asm_submitter": "Weill Cornell Medicine",
        "gbrs_paired_asm": "GCA_005341425.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/341/425/GCF_005341425.1_ASM534142v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1905587",
        "genome_size_ungapped": "1905487",
        "gc_percent": "52.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_005341425.1-RS_2024_03_29",
        "annotation_date": "2024-03-29",
        "total_gene_count": "1918",
        "protein_coding_gene_count": "1763",
        "non_coding_gene_count": "76",
        "pubmed_id": "30718479"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-05-14",
    "dateModified": "2019-05-14",
    "datePublished": "2019-05-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Limosilactobacillus fermentum"
        ],
        "sample_taxid": [
            "1613"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.540 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1905487",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1905487",
        "N50 (bp)": "1905487",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.3",
        "Number of CDSs": "1911",
        "Average Protein Length": "286.6",
        "Coding Ratio (%)": "86.2",
        "Number of rRNAs": "15",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Limosilactobacillus fermentum",
                "strain": "strain=B1 28",
                "accession": "GCA_005341425.1",
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                "species_taxid": 1613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 635,
                "total_fragments": 635,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Limosilactobacillus fermentum",
                "strain": "strain=DSM 20052",
                "accession": "GCA_013394085.1",
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                "species_taxid": 1613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9354,
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                "total_fragments": 635,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Limosilactobacillus fermentum",
                "strain": "strain=ATCC 14931",
                "accession": "GCA_000159215.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Limosilactobacillus gorillae",
                "strain": "strain=KZ01",
                "accession": "GCA_001293735.1",
                "taxid": 1450649,
                "species_taxid": 1450649,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4814,
                "matched_fragments": 330,
                "total_fragments": 635,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus antri",
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                "accession": "GCA_000160835.1",
                "taxid": 227943,
                "species_taxid": 227943,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5192,
                "matched_fragments": 101,
                "total_fragments": 635,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus antri",
                "strain": "strain=DSM 16041",
                "accession": "GCA_001435475.1",
                "taxid": 227943,
                "species_taxid": 227943,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3688,
                "matched_fragments": 97,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus ingluviei",
                "strain": "strain=DSM 15946",
                "accession": "GCA_001435775.1",
                "taxid": 148604,
                "species_taxid": 148604,
                "relation_to_type": "type",
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                "ani": 78.0946,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus panis",
                "strain": "strain=DSM 6035",
                "accession": "GCA_001027985.1",
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                "species_taxid": 47493,
                "relation_to_type": "type",
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                "ani": 77.9319,
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                "total_fragments": 635,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus oris",
                "strain": "strain=DSM 4864",
                "accession": "GCA_001434465.1",
                "taxid": 1632,
                "species_taxid": 1632,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.642,
                "matched_fragments": 100,
                "total_fragments": 635,
                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_013394085.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001436025.1",
                "gtdb_species": "s__Limosilactobacillus mucosae",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.05",
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                "num_clustered_genomes": 22,
                "status": "-"
            },
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                "accession": "GCF_000160835.1",
                "gtdb_species": "s__Limosilactobacillus antri",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
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                "mean_intra_species_ani": "99.98",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.51",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_012843675.1",
                "gtdb_species": "s__Limosilactobacillus sp012843675",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
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                "accession": "GCA_019117185.1",
                "gtdb_species": "s__Limosilactobacillus intestinipullorum",
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        ]
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    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}