{
    "type": "genome",
    "identifier": "GCF_005403045.1",
    "organism": "Pseudaquabacterium pictum",
    "title": "Pseudaquabacterium pictum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Biological Sciences, Tokyo Metropolitan University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_005403045.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00161080",
        "wgs_master": "BJCL00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2315236",
        "species_taxid": "2315236",
        "organism_name": "Pseudaquabacterium pictum",
        "infraspecific_name": "strain=W35",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/03/18",
        "asm_name": "ASM540304v1",
        "asm_submitter": "Biological Sciences, Tokyo Metropolitan University",
        "gbrs_paired_asm": "GCA_005403045.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/403/045/GCF_005403045.1_ASM540304v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6136994",
        "genome_size_ungapped": "6136994",
        "gc_percent": "70.500000",
        "replicon_count": "0",
        "scaffold_count": "64",
        "contig_count": "64",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_005403045.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "5559",
        "protein_coding_gene_count": "5459",
        "non_coding_gene_count": "53",
        "pubmed_id": "31622237"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-03-18",
    "dateModified": "2019-03-18",
    "datePublished": "2019-03-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudaquabacterium pictum"
        ],
        "sample_taxid": [
            "2315236"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Tokyo, Ome, Tama River"
        ],
        "sample_host_location_id": [],
        "data_size": "1.616 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6136994",
        "Number of Sequences": "64",
        "Longest Sequences (bp)": "893577",
        "N50 (bp)": "327274",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "70.5",
        "Number of CDSs": "5459",
        "Average Protein Length": "346.3",
        "Coding Ratio (%)": "92.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Rubrivivax benzoatilyticus",
                "strain": "strain=JA2",
                "accession": "GCA_000190375.2",
                "taxid": 316997,
                "species_taxid": 316997,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7593,
                "matched_fragments": 796,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Schlegelella thermodepolymerans",
                "strain": "strain=DSM 15344",
                "accession": "GCA_003349825.1",
                "taxid": 215580,
                "species_taxid": 215580,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5335,
                "matched_fragments": 743,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rubrivivax benzoatilyticus",
                "strain": "strain=JA2",
                "accession": "GCA_000420125.1",
                "taxid": 316997,
                "species_taxid": 316997,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5167,
                "matched_fragments": 839,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Schlegelella thermodepolymerans",
                "strain": "strain=DSM 15344",
                "accession": "GCA_002933415.1",
                "taxid": 215580,
                "species_taxid": 215580,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4652,
                "matched_fragments": 740,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerotilus hippei",
                "strain": "strain=DSM 566",
                "accession": "GCA_003201595.1",
                "taxid": 744406,
                "species_taxid": 744406,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4423,
                "matched_fragments": 777,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerotilus natans subsp. natans",
                "strain": "strain=DSM 6575",
                "accession": "GCA_000689195.1",
                "taxid": 882627,
                "species_taxid": 34103,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4423,
                "matched_fragments": 780,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerotilus sulfidivorans",
                "strain": "strain=D-501",
                "accession": "GCA_013426975.1",
                "taxid": 639200,
                "species_taxid": 639200,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4,
                "matched_fragments": 816,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ideonella dechloratans",
                "strain": "strain=CCUG 30977",
                "accession": "GCA_021049305.1",
                "taxid": 36863,
                "species_taxid": 36863,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3995,
                "matched_fragments": 829,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerotilus natans",
                "strain": "strain=ATCC 13338",
                "accession": "GCA_900156335.1",
                "taxid": 34103,
                "species_taxid": 34103,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3816,
                "matched_fragments": 827,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Schlegelella thermodepolymerans",
                "strain": "strain=DSM 15344",
                "accession": "GCA_015476235.1",
                "taxid": 215580,
                "species_taxid": 215580,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3783,
                "matched_fragments": 760,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ideonella benzenivorans",
                "strain": "strain=B7",
                "accession": "GCA_020387415.1",
                "taxid": 2831643,
                "species_taxid": 2831643,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3479,
                "matched_fragments": 777,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rubrivivax gelatinosus",
                "strain": "strain=DSM 1709",
                "accession": "GCA_016583525.1",
                "taxid": 28068,
                "species_taxid": 28068,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.2711,
                "matched_fragments": 883,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rubrivivax gelatinosus",
                "strain": "strain=DSM 1709",
                "accession": "GCA_004340905.1",
                "taxid": 28068,
                "species_taxid": 28068,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.1658,
                "matched_fragments": 896,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerotilus montanus",
                "strain": "strain=HS",
                "accession": "GCA_013426955.1",
                "taxid": 522889,
                "species_taxid": 522889,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1369,
                "matched_fragments": 773,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerotilus montanus",
                "strain": "strain=DSM 21226",
                "accession": "GCA_013410775.1",
                "taxid": 522889,
                "species_taxid": 522889,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0529,
                "matched_fragments": 784,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azohydromonas caseinilytica",
                "strain": "strain=G-1-1-14",
                "accession": "GCA_012927045.1",
                "taxid": 2728836,
                "species_taxid": 2728836,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9381,
                "matched_fragments": 928,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azohydromonas australica",
                "strain": "strain=DSM 1124",
                "accession": "GCA_000430725.1",
                "taxid": 364039,
                "species_taxid": 364039,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9364,
                "matched_fragments": 941,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azohydromonas aeria",
                "strain": "strain=CFCC 13393",
                "accession": "GCA_009760915.1",
                "taxid": 2590212,
                "species_taxid": 2590212,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6558,
                "matched_fragments": 992,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azohydromonas lata",
                "strain": "strain=NBRC 102462",
                "accession": "GCA_001571085.1",
                "taxid": 45677,
                "species_taxid": 45677,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6248,
                "matched_fragments": 844,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pelomonas puraquae",
                "strain": "strain=CCUG 52769",
                "accession": "GCA_002205845.1",
                "taxid": 431059,
                "species_taxid": 431059,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3399,
                "matched_fragments": 840,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Schlegelella brevitalea",
                "strain": "strain=DSM 7029",
                "accession": "GCA_001017435.1",
                "taxid": 413882,
                "species_taxid": 413882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1866,
                "matched_fragments": 692,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquabacterium soli",
                "strain": "strain=SJQ9",
                "accession": "GCA_003933735.1",
                "taxid": 2493092,
                "species_taxid": 2493092,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0788,
                "matched_fragments": 641,
                "total_fragments": 2022,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_005403045.1",
                "gtdb_species": "s__Aquabacterium_A pictum",
                "ani": 100.0,
                "matched_fragments": 2021,
                "total_fragments": 2022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017999135.1",
                "gtdb_species": "s__Aquabacterium_A sp017999135",
                "ani": 89.8285,
                "matched_fragments": 814,
                "total_fragments": 2022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001770815.1",
                "gtdb_species": "s__Aquabacterium_A sp001770815",
                "ani": 85.5158,
                "matched_fragments": 1149,
                "total_fragments": 2022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016790515.1",
                "gtdb_species": "s__Aquabacterium_A sp016790515",
                "ani": 83.8857,
                "matched_fragments": 1018,
                "total_fragments": 2022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017992055.1",
                "gtdb_species": "s__Aquabacterium_A sp017992055",
                "ani": 83.5492,
                "matched_fragments": 1212,
                "total_fragments": 2022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002198735.1",
                "gtdb_species": "s__Aquabacterium_A sp002198735",
                "ani": 82.5269,
                "matched_fragments": 1127,
                "total_fragments": 2022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016213205.1",
                "gtdb_species": "s__Aquabacterium_A sp016213205",
                "ani": 81.7869,
                "matched_fragments": 1042,
                "total_fragments": 2022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013266755.1",
                "gtdb_species": "s__Aquabacterium_A terrae",
                "ani": 81.0285,
                "matched_fragments": 1058,
                "total_fragments": 2022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003265685.1",
                "gtdb_species": "s__Piscinibacter caeni",
                "ani": 80.9819,
                "matched_fragments": 958,
                "total_fragments": 2022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Piscinibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016721465.1",
                "gtdb_species": "s__Aquabacterium_A sp016721465",
                "ani": 80.8617,
                "matched_fragments": 981,
                "total_fragments": 2022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.92",
                "min_intra_species_ani": "98.92",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_014873965.1",
                "gtdb_species": "s__VBDL01 sp014873965",
                "ani": 80.7715,
                "matched_fragments": 908,
                "total_fragments": 2022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__VBDL01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003201595.1",
                "gtdb_species": "s__Sphaerotilus hippei",
                "ani": 80.5035,
                "matched_fragments": 770,
                "total_fragments": 2022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sphaerotilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Pseudaquabacterium",
        "pictum"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}