{ "type": "genome", "identifier": "GCF_005405105.1", "organism": "Lactiplantibacillus dongliensis", "title": "Lactiplantibacillus dongliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Northeast Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005405105.1", "bioproject": "PRJNA224116", "biosample": "SAMD00164301", "wgs_master": "BJDK00000000.1", "refseq_category": "reference genome", "taxid": "2559919", "species_taxid": "2559919", "organism_name": "Lactiplantibacillus dongliensis", "infraspecific_name": "strain=218-3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/29", "asm_name": "ASM540510v1", "asm_submitter": "Northeast Agricultural University", "gbrs_paired_asm": "GCA_005405105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/405/105/GCF_005405105.1_ASM540510v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3107413", "genome_size_ungapped": "3107413", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "71", "contig_count": "71", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005405105.1-RS_2024_06_17", "annotation_date": "2024-06-17", "total_gene_count": "2905", "protein_coding_gene_count": "2816", "non_coding_gene_count": "66", "pubmed_id": "31361212" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-29", "dateModified": "2019-03-29", "datePublished": "2019-03-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Lactiplantibacillus dongliensis" ], "sample_taxid": [ "2559919" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.888 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3107413", "Number of Sequences": "71", "Longest Sequences (bp)": "165308", "N50 (bp)": "67560", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.7", "Number of CDSs": "2882", "Average Protein Length": "299.2", "Coding Ratio (%)": "83.2", "Number of rRNAs": "3", "Number of tRNAs": "58", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lactiplantibacillus dongliensis", "strain": "strain=218-3", "accession": "GCA_005405105.1", "taxid": 2559919, "species_taxid": 2559919, 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