{
    "type": "genome",
    "identifier": "GCF_005405325.1",
    "organism": "Companilactobacillus heilongjiangensis",
    "title": "Companilactobacillus heilongjiangensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Northeast Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_005405325.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00164312",
        "wgs_master": "BJDV00000000.1",
        "refseq_category": "na",
        "taxid": "1074467",
        "species_taxid": "1074467",
        "organism_name": "Companilactobacillus heilongjiangensis",
        "infraspecific_name": "strain=S4-3",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/03/29",
        "asm_name": "ASM540532v1",
        "asm_submitter": "Northeast Agricultural University",
        "gbrs_paired_asm": "GCA_005405325.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/405/325/GCF_005405325.1_ASM540532v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2734063",
        "genome_size_ungapped": "2734063",
        "gc_percent": "37.500000",
        "replicon_count": "0",
        "scaffold_count": "26",
        "contig_count": "26",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_005405325.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "2434",
        "protein_coding_gene_count": "2363",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-03-29",
    "dateModified": "2019-03-29",
    "datePublished": "2019-03-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Companilactobacillus heilongjiangensis"
        ],
        "sample_taxid": [
            "1074467"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.771 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2734063",
        "Number of Sequences": "26",
        "Longest Sequences (bp)": "282612",
        "N50 (bp)": "191601",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.4",
        "Number of CDSs": "2433",
        "Average Protein Length": "308.9",
        "Coding Ratio (%)": "82.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Companilactobacillus heilongjiangensis",
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                "relation_to_type": "type",
                "validated": true,
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            },
            {
                "organism_name": "Companilactobacillus heilongjiangensis",
                "strain": "strain=DSM 28069",
                "accession": "GCA_000831645.3",
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                "relation_to_type": "type",
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            },
            {
                "organism_name": "Companilactobacillus huachuanensis",
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                "accession": "GCA_005404815.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Companilactobacillus nantensis",
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                "accession": "GCA_001435815.1",
                "taxid": 305793,
                "species_taxid": 305793,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Companilactobacillus zhachilii",
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                "accession": "GCA_003606365.2",
                "taxid": 2304606,
                "species_taxid": 2304606,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3857,
                "matched_fragments": 629,
                "total_fragments": 897,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Companilactobacillus musae",
                "strain": "strain=313",
                "accession": "GCA_003573575.1",
                "taxid": 1903258,
                "species_taxid": 1903258,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Companilactobacillus paralimentarius",
                "strain": "strain=DSM 13238",
                "accession": "GCA_009764345.1",
                "taxid": 83526,
                "species_taxid": 83526,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4933,
                "matched_fragments": 407,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Companilactobacillus kimchii",
                "strain": "strain=DSM 13961",
                "accession": "GCA_009764365.1",
                "taxid": 2801452,
                "species_taxid": 2801452,
                "relation_to_type": "type",
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                "ani": 81.4712,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Companilactobacillus allii",
                "strain": "strain=WiKim39",
                "accession": "GCA_023923085.1",
                "taxid": 1847728,
                "species_taxid": 1847728,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3522,
                "matched_fragments": 241,
                "total_fragments": 897,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Companilactobacillus mishanensis",
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                "accession": "GCA_003946505.1",
                "taxid": 2486008,
                "species_taxid": 2486008,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.818,
                "matched_fragments": 205,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000831645.3",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Companilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_005404815.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Companilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
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            },
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            },
            {
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": null,
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    },
    "_genome_taxon": [
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        "heilongjiangensis"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}