{ "type": "genome", "identifier": "GCF_005405465.1", "organism": "Weissella thailandensis", "title": "Weissella thailandensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Northeast Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005405465.1", "bioproject": "PRJNA224116", "biosample": "SAMD00164319", "wgs_master": "BJEC00000000.1", "refseq_category": "reference genome", "taxid": "89061", "species_taxid": "89061", "organism_name": "Weissella thailandensis", "infraspecific_name": "strain=JCM 10695", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/29", "asm_name": "ASM540546v1", "asm_submitter": "Northeast Agricultural University", "gbrs_paired_asm": "GCA_005405465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/405/465/GCF_005405465.1_ASM540546v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1974613", "genome_size_ungapped": "1974481", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "43", "contig_count": "43", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005405465.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "2051", "protein_coding_gene_count": "1918", "non_coding_gene_count": "98", "pubmed_id": "32100692" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-29", "dateModified": "2019-03-29", "datePublished": "2019-03-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Weissella thailandensis" ], "sample_taxid": [ "89061" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand" ], "sample_host_location_id": [], "data_size": "0.561 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1974613", "Number of Sequences": "43", "Longest Sequences (bp)": "198590", "N50 (bp)": "89022", "Gap Ratio (%)": "0.006685", "GCcontent (%)": "38.7", "Number of CDSs": "1953", "Average Protein Length": "291.3", "Coding Ratio (%)": "86.4", "Number of rRNAs": "10", "Number of tRNAs": "70", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Weissella thailandensis", "strain": "strain=JCM 10695", "accession": "GCA_005405465.1", "taxid": 89061, "species_taxid": 89061, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 637, 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"mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001436895.1", "gtdb_species": "s__Weissella confusa", "ani": 79.2796, "matched_fragments": 111, "total_fragments": 638, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Weissella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.10", "min_intra_species_ani": "97.29", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 80, "status": "-" }, { "accession": "GCF_001437425.1", "gtdb_species": "s__Weissella minor", "ani": 78.8141, "matched_fragments": 99, "total_fragments": 638, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Weissella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.93", "min_intra_species_ani": "95.93", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004521965.1", "gtdb_species": "s__Weissella cibaria_A", "ani": 78.2381, "matched_fragments": 115, "total_fragments": 638, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Weissella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": -0.155, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 30.0, "optimum_ph": 6.18, "genome_size": 1974613.0, "gc_content": 38.676, "coding_genes": 1717.48, "rRNA16S_genes": 7.2, "tRNA_genes": 74.041, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Weissella", "thailandensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }