{ "type": "genome", "identifier": "GCF_005405485.1", "organism": "Enterococcus hulanensis", "title": "Enterococcus hulanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Northeast Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005405485.1", "bioproject": "PRJNA224116", "biosample": "SAMD00164440", "wgs_master": "BJED00000000.1", "refseq_category": "reference genome", "taxid": "2559929", "species_taxid": "2559929", "organism_name": "Enterococcus hulanensis", "infraspecific_name": "strain=190-7", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/03/29", "asm_name": "ASM540548v1", "asm_submitter": "Northeast Agricultural University", "gbrs_paired_asm": "GCA_005405485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/405/485/GCF_005405485.1_ASM540548v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4746262", "genome_size_ungapped": "4745116", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005405485.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "4569", "protein_coding_gene_count": "4485", "non_coding_gene_count": "62", "pubmed_id": "31339483" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-03-29", "dateModified": "2019-03-29", "datePublished": "2019-03-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus hulanensis" ], "sample_taxid": [ "2559929" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.347 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4746262", "Number of Sequences": "47", "Longest Sequences (bp)": "557958", "N50 (bp)": "188469", "Gap Ratio (%)": "0.024145", "GCcontent (%)": "40.3", "Number of CDSs": "4498", "Average Protein Length": "305.4", "Coding Ratio (%)": "86.8", "Number of rRNAs": "2", "Number of tRNAs": "53", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus hulanensis", "strain": "strain=190-7", "accession": "GCA_005405485.1", "taxid": 2559929, "species_taxid": 2559929, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1553, "total_fragments": 1558, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus raffinosus", "strain": "strain=DSM 5633", "accession": "GCA_001886185.1", "taxid": 71452, "species_taxid": 71452, "relation_to_type": "type", "validated": true, "ani": 82.3503, "matched_fragments": 840, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus raffinosus", "strain": "strain=NBRC 100492", "accession": "GCA_001544115.1", "taxid": 71452, "species_taxid": 71452, "relation_to_type": "type", "validated": true, "ani": 82.3157, "matched_fragments": 830, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus malodoratus", "strain": "strain=DSM 20681", "accession": "GCA_001886025.1", "taxid": 71451, "species_taxid": 71451, "relation_to_type": "type", "validated": true, "ani": 82.1411, "matched_fragments": 902, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus malodoratus", "strain": "strain=ATCC 43197", "accession": "GCA_000393875.1", "taxid": 71451, "species_taxid": 71451, "relation_to_type": "type", "validated": true, "ani": 82.1364, "matched_fragments": 922, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus malodoratus", "strain": "strain=ATCC 43197", "accession": "GCA_000407185.1", "taxid": 71451, "species_taxid": 71451, "relation_to_type": "type", "validated": true, "ani": 82.0903, "matched_fragments": 913, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus malodoratus", "strain": "strain=NCTC12365", "accession": "GCA_900447955.1", "taxid": 71451, "species_taxid": 71451, "relation_to_type": "type", "validated": true, "ani": 82.0825, "matched_fragments": 933, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus avium", "strain": "strain=ATCC 14025", "accession": "GCA_000407245.1", "taxid": 33945, "species_taxid": 33945, "relation_to_type": "type", "validated": true, "ani": 81.7138, "matched_fragments": 822, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus avium", "strain": "strain=DSM 20679", "accession": "GCA_001885775.1", "taxid": 33945, "species_taxid": 33945, "relation_to_type": "type", "validated": true, "ani": 81.708, "matched_fragments": 796, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus avium", "strain": "strain=NCTC9938", "accession": "GCA_900447655.1", "taxid": 33945, "species_taxid": 33945, "relation_to_type": "type", "validated": true, "ani": 81.667, "matched_fragments": 824, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus avium", "strain": "strain=ATCC 14025", "accession": "GCA_000406965.1", "taxid": 33945, "species_taxid": 33945, "relation_to_type": "type", "validated": true, "ani": 81.6616, "matched_fragments": 829, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus lactis", "strain": "strain=CCM 8412", "accession": "GCA_015751045.1", "taxid": 357441, "species_taxid": 357441, "relation_to_type": "type", "validated": true, "ani": 77.9793, "matched_fragments": 98, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vagococcus zengguangii", "strain": "strain=MN-17", "accession": "GCA_005145005.1", "taxid": 2571750, "species_taxid": 2571750, "relation_to_type": "type", "validated": true, "ani": 77.6253, "matched_fragments": 55, "total_fragments": 1558, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus ratti", "strain": "strain=DSM 15687", "accession": "GCA_001886195.1", "taxid": 150033, "species_taxid": 150033, "relation_to_type": "type", 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001886185.1", "gtdb_species": "s__Enterococcus_A raffinosus", "ani": 82.3506, "matched_fragments": 840, "total_fragments": 1558, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.27", "min_intra_species_ani": "97.96", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_000407185.1", "gtdb_species": "s__Enterococcus_A malodoratus", "ani": 82.0659, "matched_fragments": 916, "total_fragments": 1558, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.33", "min_intra_species_ani": "98.27", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.84", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_018917525.1", "gtdb_species": "s__Enterococcus_A raffinosus_A", "ani": 81.8548, "matched_fragments": 827, "total_fragments": 1558, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000406965.1", "gtdb_species": "s__Enterococcus_A avium", "ani": 81.668, "matched_fragments": 827, "total_fragments": 1558, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.01", "min_intra_species_ani": "97.91", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.78", "num_clustered_genomes": 43, "status": "-" }, { "accession": "GCF_005405205.1", "gtdb_species": "s__Enterococcus_A pingfangensis", "ani": 81.6342, "matched_fragments": 442, "total_fragments": 1558, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000407545.1", "gtdb_species": "s__Enterococcus_A gilvus", "ani": 81.4061, "matched_fragments": 687, "total_fragments": 1558, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "97.90", 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001885905.1", "gtdb_species": "s__Enterococcus_A devriesei", "ani": 80.5966, "matched_fragments": 549, "total_fragments": 1558, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.13", "min_intra_species_ani": "98.05", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001885945.1", "gtdb_species": "s__Enterococcus_A hermanniensis", "ani": 80.1739, "matched_fragments": 389, "total_fragments": 1558, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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"psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.031, "coccus_cell_shape": 0.812, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.156, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Enterococcus", "hulanensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }