{ "type": "genome", "identifier": "GCF_005406215.1", "organism": "Campylobacter aviculae", "title": "Campylobacter aviculae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "MIT", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005406215.1", "bioproject": "PRJNA224116", "biosample": "SAMN07710581", "wgs_master": "NXMA00000000.1", "refseq_category": "reference genome", "taxid": "2510190", "species_taxid": "2510190", "organism_name": "Campylobacter aviculae", "infraspecific_name": "strain=MIT17-670", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/15", "asm_name": "ASM540621v1", "asm_submitter": "MIT", "gbrs_paired_asm": "GCA_005406215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/406/215/GCF_005406215.1_ASM540621v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1697678", "genome_size_ungapped": "1697678", "gc_percent": "29.500000", "replicon_count": "0", "scaffold_count": "59", "contig_count": "59", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005406215.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "1818", "protein_coding_gene_count": "1709", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-15", "dateModified": "2019-05-15", "datePublished": "2019-05-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Campylobacter aviculae" ], "sample_taxid": [ "2510190" ], "sample_host_organism": [ "Taeniopygia guttata" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.464 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1697678", "Number of Sequences": "59", "Longest Sequences (bp)": "177418", "N50 (bp)": "103572", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.6", "Number of CDSs": "1705", "Average Protein Length": "299.8", "Coding Ratio (%)": "90.3", "Number of rRNAs": "2", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Campylobacter aviculae", "strain": "strain=MIT17-670", "accession": "GCA_005406215.1", "taxid": 2510190, "species_taxid": 2510190, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 542, "total_fragments": 542, "ani_threshold": 95, "status": "conclusive" }, { 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"N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016598935.1", "gtdb_species": "s__Campylobacter_D sp016598935", "ani": 86.897, "matched_fragments": 424, "total_fragments": 542, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000254135.1", "gtdb_species": "s__Campylobacter_D coli", "ani": 81.0324, "matched_fragments": 359, "total_fragments": 542, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "96.32", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.84", 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