{ "type": "genome", "identifier": "GCF_005434975.1", "organism": "Parerythrobacter lutipelagi", "title": "Parerythrobacter lutipelagi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jeju National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005434975.1", "bioproject": "PRJNA224116", "biosample": "SAMN11053883", "wgs_master": "SKCJ00000000.1", "refseq_category": "reference genome", "taxid": "1964208", "species_taxid": "1964208", "organism_name": "Parerythrobacter lutipelagi", "infraspecific_name": "strain=GH1-16", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/16", "asm_name": "ASM543497v1", "asm_submitter": "Jeju National University", "gbrs_paired_asm": "GCA_005434975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/434/975/GCF_005434975.1_ASM543497v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3097651", "genome_size_ungapped": "3097651", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005434975.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3031", "protein_coding_gene_count": "2973", "non_coding_gene_count": "51", "pubmed_id": "31050623" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-16", "dateModified": "2019-05-16", "datePublished": "2019-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Parerythrobacter lutipelagi" ], "sample_taxid": [ "1964208" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Gangwha Island, Incheon" ], "sample_host_location_id": [], "data_size": "0.869 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3097651", "Number of Sequences": "2", "Longest Sequences (bp)": "1702330", "N50 (bp)": "1702330", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.6", "Number of CDSs": "2963", "Average Protein Length": "319.6", "Coding Ratio (%)": "91.7", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alteriqipengyuania abyssalis", "strain": "strain=NZ-12B", "accession": "GCA_019857185.1", "taxid": 2860200, "species_taxid": 2860200, "relation_to_type": "type", "validated": true, "ani": 79.1018, "matched_fragments": 349, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 78.9545, "matched_fragments": 376, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aurantiaca", "strain": "strain=1NDH13", "accession": "GCA_019711375.1", "taxid": 2867233, "species_taxid": 2867233, "relation_to_type": "type", "validated": true, "ani": 78.9505, "matched_fragments": 375, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontixanthobacter aquaemixtae", "strain": "strain=KCTC 52763", "accession": "GCA_009827395.1", "taxid": 1958940, "species_taxid": 1958940, "relation_to_type": "type", "validated": true, "ani": 78.9089, "matched_fragments": 362, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania proteolytica", "strain": "strain=6B39", "accession": "GCA_019711565.1", "taxid": 2867239, "species_taxid": 2867239, "relation_to_type": "type", "validated": true, "ani": 78.8499, "matched_fragments": 415, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gaetbuli", "strain": "strain=DSM 16225", "accession": "GCA_009827315.1", "taxid": 266952, "species_taxid": 266952, "relation_to_type": "type", "validated": true, "ani": 78.8427, "matched_fragments": 376, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania qiaonensis", "strain": "strain=6D47A", "accession": "GCA_019711515.1", "taxid": 2867240, "species_taxid": 2867240, "relation_to_type": "type", "validated": true, "ani": 78.8199, "matched_fragments": 335, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gelatinilytica", "strain": "strain=1NDH1", "accession": "GCA_019711315.1", "taxid": 2867231, "species_taxid": 2867231, "relation_to_type": "type", "validated": true, "ani": 78.8032, "matched_fragments": 374, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiapuensis", "strain": "strain=1NDW9", "accession": "GCA_019711395.1", "taxid": 2867236, "species_taxid": 2867236, "relation_to_type": "type", "validated": true, "ani": 78.6849, "matched_fragments": 359, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marensis", "strain": "strain=DSM 21428", "accession": "GCA_001461885.1", "taxid": 543877, "species_taxid": 543877, "relation_to_type": "type", "validated": true, "ani": 78.6527, "matched_fragments": 337, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter 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"GCA_009827995.1", "taxid": 795812, "species_taxid": 795812, "relation_to_type": "type", "validated": true, "ani": 78.2885, "matched_fragments": 319, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontixanthobacter luteolus", "strain": "strain=SW-109", "accession": "GCA_009828095.1", "taxid": 295089, "species_taxid": 295089, "relation_to_type": "type", "validated": true, "ani": 78.2729, "matched_fragments": 364, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 78.2708, "matched_fragments": 353, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allopontixanthobacter sediminis", "strain": "strain=KCTC 42453", "accession": "GCA_009828115.1", "taxid": 1689985, 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79.2949, "matched_fragments": 322, "total_fragments": 1032, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Qipengyuania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001542855.1", "gtdb_species": "s__Qipengyuania sp001542855", "ani": 79.0761, "matched_fragments": 396, "total_fragments": 1032, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Qipengyuania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.07", "min_intra_species_ani": "97.03", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_009827515.1", "gtdb_species": "s__Pelagerythrobacter marinus", "ani": 78.9551, 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null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Parerythrobacter", "lutipelagi" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }