{ "type": "genome", "identifier": "GCF_005473905.2", "organism": "Ruminiclostridium herbifermentans", "title": "Ruminiclostridium herbifermentans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Technical university of Munich", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005473905.2", "bioproject": "PRJNA224116", "biosample": "SAMN10417326", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2488810", "species_taxid": "2488810", "organism_name": "Ruminiclostridium herbifermentans", "infraspecific_name": "strain=MA18", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/22", "asm_name": "ASM547390v2", "asm_submitter": "Technical university of Munich", "gbrs_paired_asm": "GCA_005473905.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/473/905/GCF_005473905.2_ASM547390v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4817678", "genome_size_ungapped": "4817678", "gc_percent": "33.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005473905.2-RS_2024_04_26", "annotation_date": "2024-04-26", "total_gene_count": "3857", "protein_coding_gene_count": "3733", "non_coding_gene_count": "79", "pubmed_id": "33555241" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-22", "dateModified": "2020-09-22", "datePublished": "2020-09-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Ruminiclostridium herbifermentans" ], "sample_taxid": [ "2488810" ], "sample_host_organism": [], 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000350485.1", "gtdb_species": "s__Ruminiclostridium termitidis", "ani": 77.2957, "matched_fragments": 148, "total_fragments": 1605, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__DSM-27016;g__Ruminiclostridium", "ani_circumscription_radius": 96.6072, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001262605.1", "gtdb_species": "s__Pseudobacteroides cellulosolvens", "ani": 77.17, "matched_fragments": 81, "total_fragments": 1605, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__DSM-2933;g__Pseudobacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.323, "cell_length": 0.344, "doubling_h": 0.68, "growth_tmp": 42.778, "optimum_tmp": 44.651, "optimum_ph": 6.992, "genome_size": 4065938.421, "gc_content": 42.626, "coding_genes": 3012.312, "rRNA16S_genes": 5.0, "tRNA_genes": 57.533, "gram_stain": 0.9, "sporulation": 0.941, "motility": 0.785, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.75, "thermophilic_range_tmp": 0.25, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.933, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.066, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Ruminiclostridium", "herbifermentans" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }