{ "type": "genome", "identifier": "GCF_005484965.1", "organism": "Brenneria nigrifluens DSM 30175 = ATCC 13028", "title": "Brenneria nigrifluens DSM 30175 = ATCC 13028", "description": "na", "data type": "Genome sequencing and assembly", "organization": "USDA-ARS", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005484965.1", "bioproject": "PRJNA224116", "biosample": "SAMN10415317", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1121120", "species_taxid": "55210", "organism_name": "Brenneria nigrifluens DSM 30175 = ATCC 13028", "infraspecific_name": "strain=ATCC 13028", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/17", "asm_name": "ASM548496v1", "asm_submitter": "USDA-ARS", "gbrs_paired_asm": "GCA_005484965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/484/965/GCF_005484965.1_ASM548496v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4891702", "genome_size_ungapped": "4891702", "gc_percent": "56.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005484965.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "4559", "protein_coding_gene_count": "4340", "non_coding_gene_count": "101", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-17", "dateModified": "2019-05-17", "datePublished": "2019-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Brenneria nigrifluens DSM 30175 = ATCC 13028" ], "sample_taxid": [ "1121120" ], "sample_host_organism": [ "walnut" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: California" ], "sample_host_location_id": [], "data_size": "1.373 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4891702", "Number of Sequences": "1", "Longest Sequences (bp)": "4891702", "N50 (bp)": "4891702", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.9", "Number of CDSs": "4462", "Average Protein Length": "318.1", "Coding Ratio (%)": "87.1", "Number of rRNAs": "22", "Number of tRNAs": "75", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brenneria nigrifluens", "strain": "strain=ATCC 13028", "accession": "GCA_005484965.1", "taxid": 55210, "species_taxid": 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{ "organism_name": "Serratia nevei", "strain": "strain=S15", "accession": "GCA_008364245.1", "taxid": 2703794, "species_taxid": 2703794, "relation_to_type": "type", "validated": true, "ani": 79.3773, "matched_fragments": 558, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia bockelmannii", "strain": "strain=S3", "accession": "GCA_008011855.1", "taxid": 2703793, "species_taxid": 2703793, "relation_to_type": "type", "validated": true, "ani": 79.2484, "matched_fragments": 555, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Musicola keenii", "strain": "strain=A3967", "accession": "GCA_022761095.1", "taxid": 2884250, "species_taxid": 2884250, "relation_to_type": "type", "validated": true, "ani": 79.0347, "matched_fragments": 528, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter youngae", "strain": "strain=NCTC13709", 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