{
    "type": "genome",
    "identifier": "GCF_005497185.1",
    "organism": "Pectobacterium polonicum",
    "title": "Pectobacterium polonicum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Gdansk",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_005497185.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10345551",
        "wgs_master": "RJTN00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2485124",
        "species_taxid": "2485124",
        "organism_name": "Pectobacterium polonicum",
        "infraspecific_name": "strain=DPMP315",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/05/17",
        "asm_name": "ASM549718v1",
        "asm_submitter": "University of Gdansk",
        "gbrs_paired_asm": "GCA_005497185.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/497/185/GCF_005497185.1_ASM549718v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4836128",
        "genome_size_ungapped": "4836068",
        "gc_percent": "51.500000",
        "replicon_count": "0",
        "scaffold_count": "71",
        "contig_count": "71",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_005497185.1-RS_2024_04_03",
        "annotation_date": "2024-04-03",
        "total_gene_count": "4494",
        "protein_coding_gene_count": "4323",
        "non_coding_gene_count": "96",
        "pubmed_id": "30973319"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-05-17",
    "dateModified": "2019-05-17",
    "datePublished": "2019-05-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pectobacterium polonicum"
        ],
        "sample_taxid": [
            "2485124"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Poland:Rebiechowo"
        ],
        "sample_host_location_id": [],
        "data_size": "1.380 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4836128",
        "Number of Sequences": "71",
        "Longest Sequences (bp)": "522842",
        "N50 (bp)": "163652",
        "Gap Ratio (%)": "0.001241",
        "GCcontent (%)": "51.3",
        "Number of CDSs": "4358",
        "Average Protein Length": "312.6",
        "Coding Ratio (%)": "84.5",
        "Number of rRNAs": "7",
        "Number of tRNAs": "71",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Pectobacterium polonicum",
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                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1581,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
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                "species_taxid": 2108399,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "ani_threshold": 95,
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            },
            {
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                "species_taxid": 1905730,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "ani": 91.0406,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium wasabiae",
                "strain": "strain=CFBP 3304",
                "accession": "GCA_000291725.1",
                "taxid": 55208,
                "species_taxid": 55208,
                "relation_to_type": "type",
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                "ani": 91.0141,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Pectobacterium wasabiae",
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                "species_taxid": 55208,
                "relation_to_type": "type",
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                "ani": 90.9994,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium atrosepticum",
                "strain": "strain=ICMP 1526",
                "accession": "GCA_001038685.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Pectobacterium quasiaquaticum",
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                "relation_to_type": "type",
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            {
                "organism_name": "Pectobacterium colocasium",
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            {
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                "accession": "GCA_021462285.1",
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                "status": "below_threshold"
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            {
                "organism_name": "Serratia nevei",
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                "accession": "GCA_008364245.1",
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                "ani": 78.561,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia bockelmannii",
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            },
            {
                "organism_name": "Providencia rustigianii",
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            {
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                "mean_intra_species_ani": "N/A",
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}