{ "type": "genome", "identifier": "GCF_005503535.1", "organism": "Mesorhizobium comanense", "title": "Mesorhizobium comanense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Trento", "publication": [ {} ], "properties": { "assembly_accession": "GCF_005503535.1", "bioproject": "PRJNA224116", "biosample": "SAMN08712282", "wgs_master": "SCNN00000000.1", "refseq_category": "reference genome", "taxid": "2502215", "species_taxid": "2502215", "organism_name": "Mesorhizobium comanense", "infraspecific_name": "strain=3P27G6", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/17", "asm_name": "ASM550353v1", "asm_submitter": "University of Trento", "gbrs_paired_asm": "GCA_005503535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/503/535/GCF_005503535.1_ASM550353v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7363057", "genome_size_ungapped": "7363057", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "76", "contig_count": "76", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_005503535.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "7050", "protein_coding_gene_count": "6905", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-17", "dateModified": "2019-05-17", "datePublished": "2019-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Mesorhizobium comanense" ], "sample_taxid": [ "2502215" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy: Trento" ], "sample_host_location_id": [], "data_size": "2.041 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7363057", "Number of Sequences": "76", "Longest Sequences (bp)": "947889", "N50 (bp)": "262341", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.5", "Number of CDSs": "6972", "Average Protein Length": "308.8", "Coding Ratio (%)": "87.7", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mesorhizobium comanense", "strain": "strain=3P27G6", "accession": "GCA_005503535.1", "taxid": 2502215, "species_taxid": 2502215, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2415, "total_fragments": 2420, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mesorhizobium jarvisii", "strain": "strain=LMG 28313", "accession": "GCA_003601985.1", "taxid": 1777867, "species_taxid": 1777867, "relation_to_type": "type", "validated": true, "ani": 87.6219, "matched_fragments": 1579, "total_fragments": 2420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium carmichaelinearum", "strain": "strain=ICMP 18942", "accession": "GCA_900199455.1", "taxid": 1208188, "species_taxid": 1208188, "relation_to_type": "type", "validated": true, "ani": 87.5688, "matched_fragments": 1724, "total_fragments": 2420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium japonicum", "strain": "strain=MAFF 303099", "accession": "GCA_000009625.1", "taxid": 2066070, "species_taxid": 2066070, "relation_to_type": "type", "validated": true, "ani": 87.4228, "matched_fragments": 1573, "total_fragments": 2420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium erdmanii", "strain": "strain=USDA 3471", "accession": "GCA_000472705.1", "taxid": 1777866, "species_taxid": 1777866, "relation_to_type": "type", "validated": true, "ani": 87.371, "matched_fragments": 1619, "total_fragments": 2420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium opportunistum", "strain": "strain=WSM2075", "accession": "GCA_000176035.2", "taxid": 593909, "species_taxid": 593909, "relation_to_type": "type", "validated": true, "ani": 87.2314, "matched_fragments": 1614, "total_fragments": 2420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium intechi", "strain": "strain=BD68", "accession": "GCA_002879535.2", "taxid": 537601, "species_taxid": 537601, "relation_to_type": "type", "validated": true, "ani": 87.1745, "matched_fragments": 1416, "total_fragments": 2420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium australicum", "strain": "strain=WSM2073", "accession": "GCA_000230995.3", "taxid": 536018, "species_taxid": 536018, "relation_to_type": "type", "validated": true, "ani": 87.022, "matched_fragments": 1513, "total_fragments": 2420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium norvegicum", "strain": "strain=10.2.2", "accession": "GCA_004919685.1", "taxid": 1085774, "species_taxid": 1085774, "relation_to_type": "type", "validated": true, "ani": 86.5081, "matched_fragments": 1611, "total_fragments": 2420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium qingshengii", "strain": "strain=CGMCC 1.12097", "accession": "GCA_900103325.1", "taxid": 1165689, "species_taxid": 1165689, "relation_to_type": "type", "validated": true, "ani": 86.2481, "matched_fragments": 1524, "total_fragments": 2420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium sophorae", "strain": "strain=ICMP 19535", "accession": "GCA_002270415.1", "taxid": 1300294, "species_taxid": 1300294, "relation_to_type": "type", "validated": true, "ani": 85.8174, "matched_fragments": 1518, "total_fragments": 2420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium waimense", "strain": "strain=ICMP19557", "accession": "GCA_003601975.1", "taxid": 1300307, "species_taxid": 1300307, "relation_to_type": "type", "validated": true, "ani": 84.7526, "matched_fragments": 1400, "total_fragments": 2420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium atlanticum", "strain": "strain=CNPSo 3140", "accession": "GCA_003289965.1", "taxid": 2233532, "species_taxid": 2233532, "relation_to_type": "type", "validated": true, "ani": 84.4008, "matched_fragments": 1390, "total_fragments": 2420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium hawassense", "strain": "strain=AC99b", "accession": "GCA_003289945.1", "taxid": 1209954, "species_taxid": 1209954, "relation_to_type": "type", "validated": true, "ani": 84.3194, "matched_fragments": 1430, "total_fragments": 2420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium silamurunense", "strain": "strain=CCBAU 01550", "accession": "GCA_014843825.1", "taxid": 499528, "species_taxid": 499528, "relation_to_type": "type", "validated": true, "ani": 84.2309, "matched_fragments": 1218, "total_fragments": 2420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium tamadayense", "strain": "strain=DSM 28320", "accession": "GCA_003863365.1", "taxid": 425306, "species_taxid": 425306, "relation_to_type": "type", "validated": true, "ani": 84.1561, "matched_fragments": 1338, "total_fragments": 2420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium onobrychidis", "strain": "strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003353565.1", "gtdb_species": "s__Mesorhizobium sp003353565", "ani": 87.9083, "matched_fragments": 1699, "total_fragments": 2420, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006442315.1", "gtdb_species": "s__Mesorhizobium sp006442315", "ani": 87.7383, "matched_fragments": 1745, "total_fragments": 2420, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium", "ani_circumscription_radius": 95.0, 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